SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25923

Length: 486 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene25923
AAATCATCTGACCTCGATAACCGATAAACCTACAGTGGCTGAGGTCTTCAAGAGCTCAAGCTGTTTGTTGCCTCTGTGGAGCAAATATTCGATGTAGGTGAAATCCTTTTTATATCTTCAAATACATGTCCAAGCTTACGAATGATCCACAGCAAAATGCGATGATGCTTCAACAAATGGGCGCAGATAATATGTGTGAGGGTGCTTTTGTCGAAGTTTCTTGTAATTATAATGGGTTGGGAGTGTCTGATTTTGCGGTGGGGCTGGATAAAAACGTATGGAACTTGAAAAGGACGCTGCTCCAGAGTGAGGTGTCGGTTGTTGGTGTGCAAGGTATGGGGGGTCTTGGCAAGACAACACTGGCATTGGCCCTCATCAACGATAAAGAGATAAAAGGTGATTGGGTTCCTATTCCCATTTATTGACGCCATTTTCATATCCTGGAAGGCACTTTGTGTGCTCTACGCTTGTGGGATAATTGCTCAG

Ace file of the UniGene sp_v2.0_unigene25923

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	5.0e-27	64%
FL-Next	tr=CC-NBS-LRR resistance-like protein; Pinus lambertiana (Sugar pine).	-	-	0.0	79%
Blast2go	cc-nbs-lrr resistance-like protein	-	-	1.41255e-30	79%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3		IPR014011	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q1L6F3

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 575 aas, your sequence is shorter than subject: 141 - 777

Fln protein: II*PR*PINLQWLRSSRAQAVCCLCGANIRCR*NPFYIFKYMSKLTNDPQQNAMMLQQMGADNMCEGAFVEVSCNYNGLGVSDFAVGLDKNVWNLKRTLLQSEVSVVGVQGMGGLGKTTLALALINDKEIKGDWVPIPIY*

Protein Length: 142

Fln nts: AAATCATCTGACCTCGATAACCGATAAACCTACAGTGGCTGAGGTCTTCAAGAGCTCAAGCTGTTTGTTGCCTCTGTGGAGCAAATATTCGATGTAGGTGAAATCCTTTTTATATCTTCAAATACATGTCCAAGCTTACGAATGATCCACAGCAAAATGCGATGATGCTTCAACAAATGGGCGCAGATAATATGTGTGAGGGTGCTTTTGTCGAAGTTTCTTGTAATTATAATGGGTTGGGAGTGTCTGATTTTGCGGTGGGGCTGGATAAAAACGTATGGAACTTGAAAAGGACGCTGCTCCAGAGTGAGGTGTCGGTTGTTGGTGTGCAAGGTATGGGGGGTCTTGGCAAGACAACACTGGCATTGGCCCTCATCAACGATAAAGAGATAAAAGGTGATTGGGTTCCTATTCCCATTTATTGACGCCATTTTCATATCCTGGAAGGCACTTTGTGTGCTCTACGCTTGTGGGATAATTGCTCAG

Fln Alignment:

Contig25923___IFKYMSKLTNDPQQNAMMLQQMGADNMCEGAFVEVSCNYNGLGVSDFAVGLDKNVWNLKRTLLQSEVSVVGVQXXXXXXXXXXXXXXINDKEIK
Q1L6F3_______________IFKHVSKLTNDPQQNAIILNQMGADNMFDGALVEVPCNHVGLGMSDFAVGLEKNIWNLKRALLQSEVTVVGVHGMGGLGKTTLALALSNDKDIK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain