SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25911

Length: 877 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25911

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	chromatin complex subunit A101 [Zea mays] gb\|AAL73042.1\|AF461813_1 chromatin complex subunit A101 [Zea mays]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	chromatin remodeling complex subunit	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	methylation-dependent chromatin silencing	GO:0006346	Biological Process	74%
Blast2go	negative regulation of histone H4 acetylation	GO:0090241	Biological Process	74%
Blast2go	maintenance of chromatin silencing	GO:0006344	Biological Process	74%
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	74%
Blast2go	regulation of DNA methylation	GO:0044030	Biological Process	74%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	74%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	74%
Blast2go	transposition, RNA-mediated	GO:0032197	Biological Process	74%
Blast2go	positive regulation of histone H3-K9 methylation	GO:0051574	Biological Process	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	ATP-dependent DNA helicase activity	GO:0004003	Molecular Function	74%
Blast2go	nucleosome	GO:0000786	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	HSA	IPR006562	-	-
Sma3	Domain of unknown function DUF1087	IPR009463	-	-
Sma3		IPR012287	-	-
Sma3	Vps54-like	IPR012501	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3		IPR014778	-	-
Sma3	HIP116, Rad5p N-terminal	IPR014905	-	-
Sma3	ATPase, nucleosome remodelling ISWI, HAND domain	IPR015194	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
703	40		60		1.0
704		40		60	1.0
706			60	40	1.0
707		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain