SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25878

Length: 871 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25878

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-binding KH domain-containing protein [Arabidopsis thaliana] gb\|AAL32764.1\| RNA-binding protein-like [Arabidopsis thaliana] gb\|AAP37761.1\| At5g53060 [Arabidopsis thaliana] gb\|AED96298.1\| RNA-binding KH domain-containing protein [Arabidopsis thaliana]	-	-	6.0e-20	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	kh domain-containing protein at4g18375-like	-	-	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
682		33		66	0.997452
683	33			66	0.997452
685		33		66	0.997452
686	33			66	0.997452
690		33		66	0.997452
691		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain