SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25854

Length: 1659 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25854

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol dehydrogenase (Fragment) n=2 Tax=Pinaceae RepID=Q43025_PINBN	-	-	89%
FL-Next	sp=Alcohol dehydrogenase; Fragaria ananassa (Strawberry).	-	-	77%
Blast2go	alcohol dehydrogenase	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P17648

Fln msg:

Fln protein: MQSAQTHKKPFEDQIDPSRNMASSTAGQVITCKAAVAWGPGQPLKIEEVEVAPPQAMEVRIKVYYTALCRTDLVFWEAKGQTPLFPRIFGHEAAGVVESVGEGVTDLKPGDSVLPVFTGECKECRHCKSEESNMCDLLRINTERGVMISDGKSRFSINGKPIYHFLGTSTFSEYTVVHVGCVAKINPKAPLSKVCILSCGVSTGMGATLNVGKPKKGSTVAIFGLGSVGLGAAEGARIAGASRIIGIDLNSDRYEQAKLFGVTEFINPQDYEKPVQEVIAEKTNGGVDCSIECTGNVKAMIQAFESCHDGWGVSVLVGVPHSDAVFATHPMNFLNERTLKGTFFGNYKPRSDLPGLVEMYLDKKLELDKFITHEVSFADINKSFDYMIKGESLRTVIKVSD*

Protein Length: 403

Fln nts: CCCCACACATGTGGGCATGCAGACACTGACACTGATGCAGCTACGCGTCGCTTACAGAAAGGGATGTTGTTAAGTATTGTGGAATATAAGGAAGCAGACAAAACTGTCTCAGTTACGAGACGAATTTTGAAGCCGATCCTTGAAGGAAAATGATAAGTAGCACTGCAGAGTAGCATTGCAGGCCAAGTTAGTTCATACAAAGCACACGAGATCATTTGGGGAGATCAACTGTTCAAGGAAATAGCCAAGCTCTACTGCAGGCTAAGTTCTCACATTCAAAGACCATTTGGGGAGATCGACCCTGCAAGGAAAACACCAAGCTCTACTGTAAGCGAAGTTGTCGC_-_ATGCAAAGTGCTCAGACGCACAAGAAACCATTTGAAGATCAGATCGATCCTTCAAGAAATATGGCAAGCTCTACTGCAGGCCAAGTTATCACTTGCAAAGCTGCTGTTGCTTGGGGACCTGGGCAGCCTTTGAAGATTGAAGAAGTGGAAGTGGCACCTCCACAAGCAATGGAAGTCAGGATCAAAGTGTATTACACTGCCTTGTGCCGCACAGACCTTGTTTTTTGGGAAGCAAAGGGTCAAACGCCTCTTTTTCCCCGCATCTTTGGACATGAAGCAGCTGGAGTTGTTGAAAGTGTTGGAGAAGGGGTAACTGACCTCAAGCCGGGTGACAGTGTGCTTCCTGTATTTACTGGAGAATGCAAGGAATGCAGACACTGCAAGTCAGAAGAGAGCAACATGTGTGATCTGCTAAGAATTAATACTGAGAGAGGGGTCATGATAAGTGATGGAAAGTCAAGGTTTTCCATCAATGGAAAGCCAATTTACCACTTCCTTGGTACATCGACTTTCAGCGAGTACACTGTTGTGCATGTGGGTTGTGTTGCCAAAATTAATCCTAAGGCTCCTCTTAGCAAAGTCTGTATTCTAAGCTGTGGTGTCTCTACAGGGATGGGTGCTACTTTGAATGTGGGCAAACCAAAGAAGGGTTCGACAGTAGCAATATTCGGCCTCGGCAGTGTTGGGCTTGGTGCGGCCGAAGGCGCAAGAATTGCAGGAGCTTCTCGAATAATTGGAATCGATTTAAATAGTGACAGATATGAACAAGCGAAACTATTTGGCGTAACGGAATTTATAAACCCTCAAGACTACGAAAAGCCTGTTCAAGAGGTAATCGCGGAAAAAACTAATGGAGGGGTGGACTGCAGCATCGAATGCACAGGAAATGTGAAGGCGATGATTCAAGCCTTCGAGTCCTGCCATGATGGTTGGGGTGTATCGGTTTTAGTGGGAGTCCCTCATTCAGATGCAGTTTTTGCAACCCATCCTATGAATTTCCTGAACGAGAGGACTTTGAAGGGAACTTTCTTTGGAAACTATAAGCCTCGTTCTGATTTGCCAGGCCTTGTAGAGATGTATCTGGATAAGAAACTTGAACTGGATAAATTTATTACTCATGAGGTCTCATTTGCTGATATCAACAAGTCATTTGATTACATGATTAAAGGAGAGAGTCTGAGAACTGTGATTAAAGTGTCTGACTGA___TTACAAGGGAAAGCTAAAGTCACTTAAGTATTAAGTGGCTGATTAAAGGGGAAAGTACGAGTATTGGCTTAATAACTGTGAGAAGTATGTACACAGGTGTATTATCTTA

Fln Alignment:

Contig25854___SSTAGQVITCKAAVAWGPGQPLKIEEVEVAPPQAMEVRIKVYYTALCRTDLVFWEAKGQTPLFPRIFXXXXXXXXXXXXXXXTDLKPGDSVLPVFTGECKECRHCKSEESNMCDLLRINTERGVMISDGKSRFSINGKPIYHFLGTSTFSEYTVVHVGCVAKINPKAPLSKVCILSCGVSTGMGATLNVGKPKKGSTVAIFGLGSVXXXXXXXXXXXXXXXXXXXDLNSDRYEQAKLFGVTEFINPQDYEKPVQEVIAEKTNGGVDCSIECTGNVKAMIQAFESCHDGWGVSVLVGVPHSDAVFATHPMNFLNERTLKGTFFGNYKPRSDLPGLVEMYLDKKLELDKFITHEVSFADINKSFDYMIKGESLRTVIKVSD
P17648_______________SSTEGKVICCRAAVAWEAGKPLVIEEVEVAPPQANVVRVKILYTSLCHTDVYFWEAKGQNPLFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKECDHCKSEESNMCDLLRINTDRGVMLNDGKSRFSIKGKPIYHFVGTSTFSVYTVTHVGCLAKINPQSPLDKVCILSCGISTGLGATLNVRKPKKGSTVAVFGLGAVGLAAAEGARMAGASRIIGVDLNSNRFEEAKKFGITEFVNPKDHKKPVQEVIAELTNGGVDRSIECTGNIQAMIPAFECVHDGWGVAVLVGVPHKDAVFTTHPMNFLNERTLKGTFFGNYKPRTDIPSVVEKYMNKELEVDKFITHQLPFSQINKAFDYMLKGEGIRCIITMEE

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1003		40		60	1.0
1019	20	80			0.996423
1060		60		40	1.0
1359		25		75	0.997389
1490	25		75		0.997389
1504		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain