SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25840

Length: 799 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25840

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosyl-L-methionine Mg-protoporphyrin IX methyltranserase [Nicotiana tabacum]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	magnesium-protoporphyrin ix methyltransferase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Magnesium protoporphyrin IX methyltransferase.	EC:2.1.1.11	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	chlorophyll biosynthetic process	GO:0015995	Biological Process	83%
Blast2go	magnesium protoporphyrin IX methyltransferase activity	GO:0046406	Molecular Function	83%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	83%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Magnesium protoporphyrin O-methyltransferase	IPR010251	-	-
Sma3	Magnesium-protoporphyrin IX methyltransferase, C-terminal	IPR010940	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Methyltransferase type 12	IPR013217	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
334	33			66	0.997452
348		66	33		0.997452
476		66		33	0.997452
518	66		33		0.997452
671		40	60		1.0
728		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain