SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25826

Length: 466 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene25826
ACCCAGACCCAGACCAAGAAACAAACGGAACCGAACCGAACCAGAGTACGCGGGGTTTATGGGGCGGTCTGTCCCTGGTTCGTATCGGTTCTGTTCGTTTTCGGTTCTGTTCCTGGATCTGGTCCTGTGTTAGTGGTTTCTTGCTCTCTCTTGTTCTGTCAAGTTTTCTTAAACTTCAGTCTGAGAAGATGGCTTCAGCAGATGTTGAGTTCCGATGCTTCGTTGGAGGTCTTGCATGGTCTACTGACGACAGAAGTCTGCAGGAGGCTTTCAGCCCCTATGGCGAAGTCGTGGAATCCAAGATTATAAGTGATCGGGAAACCGGTAGATCCCGTGATCGTGGCGAACGTGGTTATGGCGGCGGCGGTTCTCGCTATGGTGGTGGTGGTGGTTCCGATGGTGGTAGCTGGAGGAGATAGTTAATATGATGCTGCGCTAAGGTTTTTTTGTCTGCAAGTGGTCTTAT

Ace file of the UniGene sp_v2.0_unigene25826

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL	-	-	5.0e-18	100%
FL-Next	tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	100%
Blast2go	glycine-rich rna-binding protein	-	-	7.21396e-23	93%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015465	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9XEL4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 62 aas, your sequence is shorter than subject: 77 - 155

Fln protein: MASADVEFRCFVGGLAWSTDDRSLQEAFSPYGEVVESKIISDRETGRSRDRGERGYGGGGSRYGGGGGSDGGSWRR*

Protein Length: 78

Fln nts: ACCCAGACCCAGACCAAGAAACAAACGGAACCGAACCGAACCAGAGTACGCGGGGTTTATGGGGCGGTCTGTCCCTGGTTCGTATCGGTTCTGTTCGTTTTCGGTTCTGTTCCTGGATCTGGTCCTGTGTTAGTGGTTTCTTGCTCTCTCTTGTTCTGTCAAGTTTTCTTAAACTTCAGTCTGAGAAG_-_ATGGCTTCAGCAGATGTTGAGTTCCGATGCTTCGTTGGAGGTCTTGCATGGTCTACTGACGACAGAAGTCTGCAGGAGGCTTTCAGCCCCTATGGCGAAGTCGTGGAATCCAAGATTATAAGTGATCGGGAAACCGGTAGATCCCGTGATCGTGGCGAACGTGGTTATGGCGGCGGCGGTTCTCGCTATGGTGGTGGTGGTGGTTCCGATGGTGGTAGCTGGAGGAGATAGTTAATATGATGCTGCGCTAAGGTTTTTTTGTCTGCAAGTGGTCTTAT

Fln Alignment:

Contig25826___MASADVEFRCFVGGLAWSTDDRSLQEAFSPYGEVVESKIISDRET
Q9XEL4_______________MASADVEFRCFVGGLAWSTDDRSLQEAFSPYGEVVESKIISDRET

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
102		66		33	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
28	42	GAACC GAACC GAACC	15
377	392	TGG TGG TGG TGG TGG T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain