SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25737

Length: 415 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene25737
AATGTCTGGAACTCAACTTCAAACAGTATGATCTTGATGGTGCAACTTTATTTGTCAGGAAAGTTGGCAAAATAGTTGTATATCTTGTGGTATATGTAGATAATCTTTTGGTGACAGGGAACAATGAGAACTACATTGCATCCATAAAGAAGGAATTGAGGAAAGGTTTTGAAATCACTGATTTGGGCTATGTTCATTACTATCTTCGTATTGAAGTAACTCAACATCCGAAGTCTATATTCCTCTCTCAAAAGAAGTACATTGGAGATCTGTTGAATAGGTTTGGCATGGATGAGTGCAATCCTTTGACTACTCCAATGGAACAGAGCTTAAAGCTCACATCAATTGAAGGAAAAGAATTTGAGGATGTAACAAAGTATAGACAGCTTGTAGGAAGTCTCATCTACCTCACTAC

Ace file of the UniGene sp_v2.0_unigene25737 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative retroelement pol polyprotein [Arabidopsis thaliana]	-	-	2.0e-19	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	copia-type polyprotein	-	-	3.34794e-24	66%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 137 - 363

Fln protein: CLELNFKQYDLDGATLFVRKVGKIVVYLVVYVDNLLVTGNNENYIASIKKELRKGFEITDLGYVHYYLRIEVTQHPKSIFLSQKKYIGDLLNRFGMDECNPLTTPMEQSLKLTSIEGKEFEDVTKYRQLVGSLIYLT

Protein Length: 138

Fln nts: AATGTCTGGAACTCAACTTCAAACAGTATGATCTTGATGGTGCAACTTTATTTGTCAGGAAAGTTGGCAAAATAGTTGTATATCTTGTGGTATATGTAGATAATCTTTTGGTGACAGGGAACAATGAGAACTACATTGCATCCATAAAGAAGGAATTGAGGAAAGGTTTTGAAATCACTGATTTGGGCTATGTTCATTACTATCTTCGTATTGAAGTAACTCAACATCCGAAGTCTATATTCCTCTCTCAAAAGAAGTACATTGGAGATCTGTTGAATAGGTTTGGCATGGATGAGTGCAATCCTTTGACTACTCCAATGGAACAGAGCTTAAAGCTCACATCAATTGAAGGAAAAGAATTTGAGGATGTAACAAAGTATAGACAGCTTGTAGGAAGTCTCATCTACCTCACTAC

Fln Alignment:

Contig25737___IASIKKELRKGFEITDLGYVHYYLRIEVTQHPKSIFLSQKKYIGDLLNRFGMDECNPLTTPMEQSLKLTSIEGKEFEDVTKYRQLVGSLIYLT
B8LKV8_______________IDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVSTPVGVGTKLSREQNEMDFDSTIFRKLVGSLMYLT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
209		33	33	33	0.997753
219	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain