SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25735

Length: 845 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25735

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PAZ multi-domain protein	-	-	4.0e-31	40%
FL-Next	tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	35%
Blast2go	argonaute protein group	-	-	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4PLA9

Fln msg: Distance to subject end: 452 aas, your sequence is shorter than subject: 281 - 959

Fln protein: LGQFLTGRQADAPQEALQVLDIVLRELPTERYIPVGRSFYSGDLAAKQSLGEGLESWRGFYQSLRPTQMGLSLNLDMSSTAFIEPLPVVDFVSKLLGKDVRAVLLSDADRVKIKKSLRGVRVEVTHRGEMHRKYRIVTLTSQPTQELSFPMGDNSTMKSVVEYFREHYNISLQQTQLPCLQVGNQQRQNYLPMEVCKIVAGQRYSKKLNDRQISALLRVTCQRPQDRENAILQTVYENAYNKDPYAKEFGIKINDKLATVEARILPAPRLKYHDSGKEKDC

Protein Length: 282

Fln nts: TTTAGGCCAATTCCTAACTGGGAGGCAAGCTGATGCTCCGCAAGAAGCCCTACAAGTTCTTGATATTGTTCTCCGGGAGCTACCAACTGAAAGGTACATTCCTGTTGGGAGATCATTTTATTCTGGTGACCTGGCGGCAAAGCAGTCCCTTGGAGAGGGATTGGAAAGCTGGCGTGGGTTTTACCAAAGTTTAAGGCCAACCCAAATGGGATTATCCCTCAATCTTGATATGTCTTCAACTGCATTCATTGAACCATTACCTGTGGTTGATTTTGTTTCGAAGCTGTTGGGCAAGGATGTGAGAGCAGTACTTTTGTCTGACGCTGATCGTGTAAAGATTAAAAAGTCCTTGAGAGGTGTTCGAGTTGAGGTAACCCACAGGGGAGAGATGCATCGAAAATACCGGATTGTTACATTGACATCACAACCTACACAGGAGCTATCCTTCCCCATGGGTGACAATTCAACTATGAAATCAGTAGTTGAATATTTTCGGGAGCATTATAATATTTCATTACAGCAAACTCAACTTCCATGCCTCCAGGTTGGAAATCAGCAGAGGCAAAATTACTTGCCAATGGAGGTTTGTAAAATAGTGGCAGGGCAGCGCTATTCAAAGAAGTTAAATGACAGACAAATCAGTGCATTGCTGAGGGTTACATGCCAGCGGCCTCAAGATAGGGAGAATGCCATATTGCAGACAGTATATGAAAATGCATATAATAAGGACCCATATGCAAAAGAATTTGGCATCAAGATCAATGATAAGCTTGCCACTGTAGAAGCACGAATTTTGCCTGCTCCTCGGCTTAAATATCATGATTCTGGCAAGGAGAAGGACTGCC

Fln Alignment:

Contig25735___LTGRQADAPQEALQVLDIVLRELPTER-YIPVGRSFYSGDLAAKQSLGEGLESWRGFYQSLRPTQMGLSLNLDMSSTAFIEPLPVVDFVSKLLGKDVRAVLLSDADRVKIKKSLRGVRVEVTHRGEMHRKYRIVTLTSQPTQELSFPM-----GDNSTMKSVVEYFREHYNISLQQT------QLPCLQVGNQQRQNYLPMEVCKIVAGQRYSKKLNDRQISALLRVTCQRPQDRENAILQTVYENAYNKDPYAKEFGIKINDKLATVEARILPAPRLKY
Q4PLA9_______________IQGEVSDKAQDALRVLDIVLRQHASRKGYLLVRQSFFHWSFAPLVELGGGVTGCRGYHISFRPTQSGLSLNMDVSTTMLIKESAVIDFL--LANQSVXNPWKINWS--KAKQVLKGVRITTVHT---NMEFKIFGLSEKPCKEQLFSMRVRSQGSQEEPPQTVDVTVHDYFVNTKQTPLQFSADLPCLDVGRKKRPNYLPIELCKILPGQRYTKALSTQQRTXLVEQSRQKPDERMQVLLKAMDVNNYNSDPLLKACNINVDKQLVRLDGRVLDPPTLKF

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
234	10			90	0.90298
235	10	90			0.90298
237			10	90	0.90298
238		90		10	0.90298
332		10		90	0.90298
333	11		88		0.923564
335	88			11	0.923564
453		66		33	0.997452
483	33			66	1.0
629	66			33	0.997452
695	66		33		0.997452
765	75		25		0.996473
779	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain