SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25707

Length: 1177 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25707

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Homogentisate phytyltransferase 2, chloroplastic n=3 Tax=Arabidopsis RepID=HPT2_ARATH	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	homogentisate solanesyltransferase	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	88%
Blast2go	carotenoid biosynthetic process	GO:0016117	Biological Process	88%
Blast2go	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	88%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	88%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	88%
Blast2go	plastoquinone biosynthetic process	GO:0010236	Biological Process	88%
Blast2go	homogentisate solanesyltransferase activity	GO:0010357	Molecular Function	88%
Blast2go	homogentisate geranylgeranyltransferase activity	GO:0010356	Molecular Function	88%
Blast2go	homogentisate farnesyltransferase activity	GO:0010355	Molecular Function	88%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	UbiA prenyltransferase family	IPR000537	-	0.0	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT82

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 87 aas, putative chimeric sequence, your sequence is shorter than subject: 202 - 388

Fln protein: RFLRPHTIRGTVLGSIALVSRALIENSHLINWWLLPKALCGLTALLCGNGYIVGINQIYDIGIDKVNKPFLPIAAGDLSVTEAWFLVLLFAAVGVAIVGLNFGPFISALYCLGLFLGTIYSVPPFRLKRFPVAAFLIIATVRGFLLNFGVYYATRAALGLKFQWSPSVVFITMFVTLFAMVIAITKDLPDVEGDRKIVRYF*

Protein Length: 203

Fln nts: AGGTTTTTGAGGCCGCACACAATTCGTGGAACTGTACTTGGCTCAATAGCTTTGGTGTCACGAGCTCTGATCGAGAATTCTCATCTTATTAATTGGTGGCTATTACCTAAGGCCTTGTGTGGACTTACTGCATTACTATGTGGAAATGGTTACATTGTTGGAATCAACCAGATATATGATATTGGAATTGACAAGGTGAACAAGCCTTTTCTACCTATAGCTGCAGGAGATCTTTCAGTTACGGAAGCTTGGTTTCTAGTATTACTTTTTGCAGCTGTGGGAGTTGCAATTGTTGGATTAAATTTTGGTCCTTTCATTTCAGCCCTTTACTGTCTTGGGCTTTTTCTGGGGACAATCTATTCTGTGCCACCATTTAGGCTAAAGAGGTTTCCAGTTGCAGCATTTTTAATTATTGCCACGGTTCGAGGTTTCCTGCTCAATTTTGGGGTATATTATGCAACTAGAGCTGCGCTTGGTCTTAAATTTCAATGGAGCCCTTCAGTGGTTTTTATCACAATGTTTGTGACATTGTTTGCCATGGTCATTGCCATAACCAAAGATCTTCCTGATGTAGAAGGCGACCGCAAGATTGTCAGATACTTTTGA___GGTTGACACTTGAGATAAATGTTGCTTTTTGACCTAAATCAGGCTCTACAGTAAAGCTGAATTTCAAATAGCCACATTGGCAACCAACCTTGGTGTCCGAAATATTGCATTTCTAGGTTCAGGACTTCTGCTTGCAAACTATGTGGGTGCAATACTCGCTGCAGTATATATGCCACAGACATTTCGAGGTAGCTTAATGGTCCTCGGGCATGCCATCTTAGTATTGTTCTTGGGTTTCCAGACATGGATTTTGGACCATTCGCTTTACACAAAGAAGATCTCTCAGGTTCTCATTGAGCGTTGGGGGATAGTTCTCGGTTGGACCAACCAACACTCAACACATATTTTCTGAAGAGCATACTTCATATAAGCCTCAAGATTATTTAATGATAATCTTTTTTTCTGCAGGGTGTTTTGGGCTAGTACCTCTCTAAAATTTCAAAATCTTTTTAAAaATTTTGTGGAAATTTTTGATAGATTTAGTTATTAAGAACCTTATATTATCAGATCTGGGAACAAAGTTGGACTCATACTCCTCAGATCTGATAGATCTGTAGATTATTTGTATATA

Fln Alignment:

Contig25707___GYIVGINQIYDIGIDKVNKPFLPIAAGDLS----VTEAWFLVLLFAAVGV-AIVGLNFGPFISALYCL---GLFLGTIYSVPPFRLKRFPVAAFLIIATVRGFLLNFGV--------YYATRAALGLKFQWSPSVVFITMFVTLFAMVIAITKDLPDVEGDR
C0PT82_______________GYTQTLNDWYDREIDAINEPYRPIPSGAISESEVITQIW--VLLLGGLGLAALLDVWAGHTVPSVFYIAVGGSLLSYIYSAPPLKLKQ------------NGWIGNFALGSSYICLPWWAGQALFG---TLKPDIMVLTVLYSIAGLGIAIINDFKSIEGDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain