SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25699

Length: 438 nt

UniGene Fasta

>sp_v2.0_unigene25699
CAGCTGGGAATCGCCTTCTCCATCATCGGCGAAATCATAACGGGGAAGGGAGCTCTGGCGCAGCTCAACATTGAGACGGGAGTCCCTGTAAGCGAGATCGAACCGCTGGTTTTGTTCAACGTTTTGTTCTTCTTGTTTGCGGCATTGAATCCCGGAAACGGTAAATTCGTCACAGACGTAGATGAAGATGAAGAATGAGAAGATCCATCAAAGAAACATGTGTTGCAAGGATTTCTAAATTTCTTTTAGATTTTCATTTGCTGTAAGGATGTTTGGTGAGAAAGATACAGACCACACAATCGATTTTCTTATCTTCAAAACCAATGACTGTACATCCTACGCAGATGAACATAAAGTGTCCACAACGAGTTATATGTCACCACAGAGGGAGCACATCACTCCCGTGAAAAGGTTCATAACACTTGAATTTCCTTTAAT

Ace file of the UniGene sp_v2.0_unigene25699

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PsbS protein n=1 Tax=Phyllostachys edulis RepID=E0WBG6_9POAL	-	-	2.0e-13	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	photosystem ii 22 kda protein	-	-	8.70775e-17	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	nonphotochemical quenching	GO:0010196	Biological Process	8.70775e-17	94%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	8.70775e-17	94%
Blast2go	response to karrikin	GO:0080167	Biological Process	8.70775e-17	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYQ2

Fln msg: your sequence is shorter than subject: 66 - 294

Fln protein: QLGIAFSIIGEIITGKGALAQLNIETGVPVSEIEPLVLFNVLFFLFAALNPGNGKFVTDVDEDEE*

Protein Length: 67

Fln nts: CAGCTGGGAATCGCCTTCTCCATCATCGGCGAAATCATAACGGGGAAGGGAGCTCTGGCGCAGCTCAACATTGAGACGGGAGTCCCTGTAAGCGAGATCGAACCGCTGGTTTTGTTCAACGTTTTGTTCTTCTTGTTTGCGGCATTGAATCCCGGAAACGGTAAATTCGTCACAGACGTAGATGAAGATGAAGAATGA___GAAGATCCATCAAAGAAACATGTGTTGCAAGGATTTCTAAATTTCTTTTAGATTTTCATTTGCTGTAAGGATGTTTGGTGAGAAAGATACAGACCACACAATCGATTTTCTTATCTTCAAAACCAATGACTGTACATCCTACGCAGATGAACATAAAGTGTCCACAACGAGTTATATGTCACCACAGAGGGAGCACATCACTCCCGTGAAAAGGTTCATAACACTTGAATTTCCTTTAAT

Fln Alignment:

Contig25699___QLGIAFSIIGEIITGKGALAQLNIETGVPVSEIEPXXXXXXXXXXXXXXXPGNGKFVT
A9NYQ2_______________QLGIAFSIIGEIITGKGALAQLNIETGVPVSEIEPLVLFNVAFFLFAALNPGNGKFVT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain