SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25696

Length: 1354 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25696

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9RSW9_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	sugar transporter erd6-like protein	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8F2

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 436 - 501

Fln protein: MTIKLDLEQGELSEQADISQPFLTAEENTESKKSFSDRRSNEGSTATVFLSTFTVVLGSLEFGYCVGFSSPVQSAMIKDLGLTTSQFSTFSSLLTIGAMVGAILSGRTADFLGRKGALRVSSACYVVGWLMISLLKNAWLLYIGRLLTGYGAGLTSYTVPVYIAEITPKNLRGGLTTTNQLSITIGILIAYLLGMLVEWRLLAIIGIIPCILLVSGLFFIPESPRWLAKVGHDKEFEEALQALRGKDCDVSDEAAEIREYVEELGNLPRAKILDLFRLKYMHSVVVGVGLMVFQQFGGINAVMFYASEIFKDAGFSSSNMASVAVAALQVPMTAIGALLMDKSGRRPLLMVSAGGMSIGCSLVGVSFYLQNHESDTHLSLVVTILALGGLLGYIAAFSLGMGGIPWIIMSEIFPINMKGIAGSLVTLVCWFGSWVI

Protein Length: 437

Fln nts: CACATAAAGCTTGGCAAGTGTTTCATAGGCCTTATTAAAGTGCC_-_ATGACGATCAAGCTAGATCTGGAGCAGGGAGAACTGAGTGAGCAGGCAGATATCAGCCAGCCATTTCTGACAGCTGAAGAGAATACTGAAAGCAAGAAAAGTTTCAGCGACAGGAGAAGCAATGAAGGTTCGACTGCAACAGTGTTCCTCAGCACTTTCACTGTGGTGCTGGGCTCTCTGGAGTTTGGATACTGTGTGGGATTCTCTTCTCCTGTTCAGTCTGCCATGATCAAGGACCTCGGCCTGACTACGTCTCAGTTTTCTACCTTTAGTTCGCTACTGACTATAGGTGCAATGGTTGGTGCAATACTGAGTGGCCGCACTGCAGATTTCTTGGGCCGGAAAGGAGCGTTAAGAGTGTCATCAGCCTGTTATGTGGTTGGATGGCTAATGATATCCCTCTTAAAGAATGCATGGCTACTATACATTGGAAGACTGCTTACAGGATATGGAGCTGGTCTTACTTCCTATACGGTTCCTGTATACATAGCTGAAATAACTCCCAAGAACTTAAGGGGAGGGCTTACAACAACAAATCAATTGTCCATAACCATCGGTATTTTAATAGCATATTTGCTTGGGATGCTAGTCGAATGGCGCCTTCTTGCTATTATAGGAATCATCCCCTGTATTCTTTTGGTATCAGGACTCTTCTTTATTCCAGAGTCCCCTAGGTGGTTGGCAAAAGTTGGCCATGACAAAGAATTTGAAGAAGCATTGCAAGCCCTTCGTGGAAAGGACTGTGATGTTTCTGATGAAGCAGCTGAAATAAGGGAATATGTAGAGGAGCTGGGAAACCTTCCTAGGGCCAAAATATTGGACTTGTTTCGGTTGAAGTATATGCATTCTGTGGTTGTTGGAGTTGGCTTGATGGTATTCCAACAATTTGGAGGAATCAATGCTGTTATGTTCTATGCCAGTGAAATTTTTAAAGATGCTGGCTTTTCTTCCAGCAACATGGCATCAGTGGCTGTGGCTGCCCTACAGGTGCCAATGACAGCAATAGGTGCACTGTTAATGGACAAATCCGGACGGCGACCTCTTTTAATGGTCTCCGCTGGAGGAATGAGCATAGGGTGCTCCCTAGTTGGAGTGTCATTCTATTTACAGAATCACGAAAGTGATACTCATCTTTCGCTCGTGGTGACCATATTGGCTCTAGGTGGTCTCTTGGGCTATATTGCAGCATTCTCTTTGGGCATGGGTGGAATTCCATGGATTATAATGTCTGAGATATTTCCTATAAATATGAAAGGCATTGCTGGCAGTTTGGTGACACTTGTTTGTTGGTTTGGGTCTTGGGTTATCAC

Fln Alignment:

Contig25696___MTIKLDLEQGELSEQADISQPFLTAEENTESKKSFSDRRSNEGSTATVFLSTFTVVLGSLEFGYCVGFSSPVQSAMIKDXXXXXXXXXXXXXXXXIGAMVGAILSGRTADFLGRKGALRVSSACYVVGWLMISLLKNAWLLYIGRLLTGYGAGLTSYTVPVYIAEITPKNLRGGLTTTNQLSITIGILIAYLLGMLVEWRLLAIIGIIPCILLVSGLFFIPESPRWLAKVGHDKEFEEALQALRGKDCDVSDEAAEIREYVEELGNLPRAKILDLFRLKYMHSVVVGVGLMVFQQFGGINAVMFYASEIFKDAGFXXXXXXXXXXXXLQVPMTAIGALLMDKSGRRPLLMVSAGGMSIGCSLVGVSFYLQNHESDTHLSLVVTXXXXXXXXXXXXXFSLGMGGIPWIIMSEIFPINMKGIAGSLVTLVCWFGSWVI
D5A8F2_______________MTIKIDLEIGELSEQADISQPFLPAEEKTESKKSFSERRSNGGSIATVVLSTFVVVLGSLEFGYSVGFSSPVQSAMMEDLGLTMSQYSTFGSLLTIGAMVGAILSGRIADFLGRKGALRVSSASYVIGWLIISLLKDAWLLDIGRLFIGYGVGLTSYTIPVYIAEITPKNLRGGLTTTNQLSITIGILIAYLLGMLVRWRLLAIIGIIPCFLLVLGLFFIPESPRWLAKVGHDKEFDEALQALLGKDCDVSVEAAEIREYVEELENLPRAKILDLFRPKYMHSVIVGVGLMVFQQLGGINAVMFYASEIFKDAGIASNHAASVAVAALQVPMTAFGALLMDRSGRRPLLMVSAGGMSLGCFLVGLSFYIQGHANDTHLAALVTILALGGLLGYIATFSLGMGGIPWIIMSEIFPINMKGIAGSLVTLVAWFGSWVI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1014		50	50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain