SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25631

Length: 1084 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25631

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phytocyanin homolog n=9 Tax=Pinus RepID=Q9LLZ7_PINTA	-	-	64%
FL-Next	tr=Putative phytocyanin; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	phytocyanin	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cupredoxin	IPR008972	-	0.0	-
Sma3	Plastocyanin-like	IPR003245	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8RIL7

Fln msg:

Fln protein: MAAVRGQVLVALGACLALAVLQSVAATTYTVGGSAGWTIPASNAKLYTDWVKATTFKLGDILVFKFATNVHNVYRVSKADYDKCVTTSPMEKYETGPASITLNSTGHHYYICAVSGHCAAGQKVSIKVSTAAAPGSSPSPAPGSSPATSNSSPAPGSSTSATPSSSGSAPGTSAGKSGASHSVSSDAAIFMAILSGFATLFL*

Protein Length: 204

Fln nts: CTTTTGAGATCTGTTCTGCGCTGCTCTGCTCTGCTGTGCGATAAAATTTCACAGGCCTCAAGTCAAGCACGGGACGCTGCCGCAGGTGATAGGGTTGGGTATTGGGTCGGCCTGGGGACACAGAC_-_ATGGCAGCTGTAAGAGGACAGGTTCTTGTAGCTTTGGGGGCATGCCTTGCTCTAGCCGTTCTGCAGAGCGTGGCCGCAACGACCTACACCGTGGGCGGAAGCGCAGGATGGACTATTCCCGCCAGCAATGCCAAGCTCTACACCGACTGGGTTAAGGCCACAACCTTTAAGCTCGGTGATATCCTCGTGTTCAAATTCGCTACAAATGTGCACAATGTTTATCGAGTGAGCAAGGCGGATTACGACAAGTGCGTGACGACTAGCCCCATGGAAAAATACGAGACAGGCCCGGCTTCCATCACTCTCAACAGCACCGGCCACCATTACTACATCTGTGCAGTTTCCGGCCACTGTGCCGCCGGCCAGAAGGTGAGCATCAAGGTCTCCACTGCAGCTGCTCCCGGCAGTTCGCCATCGCCGGCTCCTGGGTCTTCTCCGGCTACATCCAATTCCTCTCCGGCTCCCGGATCGAGCACGTCTGCCACACCATCCAGTTCAGGAAGTGCCCCAGGTACGAGCGCCGGCAAGTCCGGTGCTTCTCACAGTGTCTCATCAGATGCAGCCATCTTCATGGCTATCCTTTCTGGATTTGCCACGCTCTTTCTCTGA___GCAATGGCTGTCATAATTATTATTAAAGTAGTGAGTTGTGGCTACTGAAACTCTTAAATTATTATGCGCGCTGTTTGGAGACATCTGTTATGCGGTATTATTTTTGTACGTATTGCTATATTTTTATTTGTGTGTTCAGCCTTATTACAGAATCCATGGTTATTCTAACTGATTTATTTATTTTTCATGGTTGGATCACATACATACTGATTCTGTTATTGCAGAGACTGTTCTTTTCCTATCTGGTTTTGTGGATACAGTAATAGTGCGTTCATGATTTTGTTTGGTGTATTTCATTATGGGTACTGTGGGTACGGTGTTTGTAATGTAGCAAATATGGAGTAGGAATC

Fln Alignment:

Contig25631___MAAVRGQXXXXXXXXXXXXXXQSVAATTYTVGGSAGWTIPASNAKLYTDWVKATTFKLGDILVFKFATNVHNVYRVSKADYDKCVTTSPMEKYETGPASITLNSTGHHYYICAVSGHCAAGQKVSIKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSVSSDAAIFMAILSGFATLFL
B8RIL7_______________MAAVRGQVLVALGACLALAVLQSVAATTYTVGGSAGWTIPASNAKLYTDWVKATTFKLGDILVFKFATNVHNVYRVSKADYDKCVTTSPMEKYETGPASITLNSTGHHYYICAVSGHCAAGQKVSIKVSTAAAPGSSPSPAPGSSPATSNSSPAPGSSTSATPSSSGSAPGTSAGKSGASHSVSSDAAIFMAILSGFATLFL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
213	66	33			0.997452
221		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
21	35	CTGCT CTGCT CTGCT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain