SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25612

Length: 1152 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene25612 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylalanine ammonia-lyase n=11 Tax=Spermatophyta RepID=PALY_PINTA	-	-	94%
FL-Next	sp=Phenylalanine ammonia-lyase; Pinus massoniana.	-	-	95%
Blast2go	phenylalanine ammonia-lyase	-	-	88%

Source	InterPros	Term	Type	Identity
Sma3	Aromatic amino acid lyase	IPR001106	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Phenylalanine ammonia-lyase	IPR005922	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C5MR78

Fln msg: Separated hits, possible frame ERROR between 183 and 194, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 282 - 718

Fln protein: CCSALCTWVVTGFAR*RSSGMKGAEIAMASYTSELLYLANPVTTHVQSAEQHNQDVNSLGxxxxxKICQAIDILKLMLSTYLTALCQAVDLRHLEENMLATVKQIVSQVAKKTLSTGLNGELLPGRFCEKDLLQVVDNEHVFSYIDDPCNASYPLTQKLRNILVEHAFKNGEGEKDPNTSIFNKIPLFEAELKAQLELQVRLARESYDKGTSPLPNRIQECRSYPLYEFVRNQLGTKLLSGTRTTSPGEVIEVVYDAINEDKVIGPLFKCLDGWKGTPGPF*

Protein Length: 283

Fln nts: TGCTGTTCGGCGCTCTGTACATGGGTGGTGACAGGATTTGCCAGGTAAAGAAGCTCAGGAATGAAAGGGGCCGAGATCGCTATGGCTTCTTACACTTCTGAGCTTCTTTACCTGGCAAATCCTGTCACCACCCATGTACAGAGCGCTGAACAGCATAACCAGGATGTGAATTCTCTGGGTCTxxxxxxxxxxxxGAAAATCTGCCAGGCCATCGATATTCTGAAGCTGATGCTCTCCACATACCTGACAGCTCTGTGCCAGGCTGTGGATTTAAGGCATCTGGAAGAAAACATGCTGGCCACTGTGAAGCAGATTGTTTCTCAGGTAGCCAAGAAAACCCTGAGCACAGGGCTCAACGGGGAGCTTTTGCCAGGCCGTTTCTGCGAAAAGGATTTGCTCCAGGTAGTGGATAACGAGCATGTTTTCTCTTACATTGACGATCCCTGCAATGCCAGCTACCCATTGACTCAGAAACTGAGAAACATCCTGGTGGAACATGCCTTCAAGAACGGAGAAGGTGAGAAGGATCCCAACACTTCCATTTTCAATAAGATTCCCCTGTTTGAAGCCGAGCTGAAGGCACAGCTTGAACTGCAAGTTCGTCTGGCCAGAGAAAGTTATGACAAAGGGACCAGCCCTCTGCCCAACAGGATCCAGGAATGCAGGTCTTATCCTCTCTATGAATTTGTGAGAAACCAGCTCGGTACCAAGCTTCTGTCTGGAACTCGGACCACTTCCCCTGGTGAAGTGATTGAAGTGGTTTACGACGCTATCAATGAGGACAAGGTCATAGGCCCTCTCTTCAAATGCTTGGATGGGTGGAAAGGAACTCCTGGCCCATTCTGAAATAAATAATCTTCCAAGATCCCCTTTATACAACGACTGCTATGATTTGAGTCCTCGGATCTTTTTGTTCATGCAGTTGTTTACCGATCTGGAATTTGATTGGTCATAAAGCTTGAATTTGTTTTTCTTTCTTTTGTTTTATACTGCTGGATTTGCATCCCACTGGATTTGCCAGAAACATGTAAGGGTGGCAGATCATTTGGGTGATCTGAAGCATGTAAAAGTGGCGGATCATTTGGGTAGCATGGCAGATCAGTTGGGTGATCGTGTACTGCTTTTTACATTACTTACATATTTAAAGATGGAAC

Fln Alignment:

Contig25612___GMKGAEIAMASYTSELLYLANPVTTHVQSAEQHNQDVNSLGLxxxxKICQAIDILKLMLSTYLTALCQAVDLRHLEENMLATVKQIVSQVAKKTLSTGLNGELLPGRFCEKDLLQVVDNEHVFSYIDDPCNASYPLTQKLRNILVEHAFKNGEGEKDPNTSIFNKIPLFEAELKAQLELQVRLARESYDKGTSPLPNRIQECRSYPLYEFVRNQLGTKLLSGTRTTSPGEVIEVVYDAINEDKVIGPLFKCLDGWKGTPGPF
C5MR78_______________GLKGAEIAMASYTSELLYLANPVTSHVQSAEQHNQDVNSLGLxxxxKSAEAIDILKLMLSTYLTALCQAVDLRHLEENMLATVKQIVSQVAKKTLSTGLNGELLPGRFCEKDLLQVVDNEHVFSYIDDPCNASYPLTQKLRNILVEHAFKNAEGEKDPNTSIFNKIPLFEAELKAQLELQVSLARESYDKGTSPLPNRIQECRSYPLYEFVRNQLGTKLLSGTRTTSPGEVIEVVYDAISEDKVIVPLFKCLDGWKGTPGPF

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
350		50		50	1.0
630	14	85			0.993533
696		20	80		0.995493
697		20		80	0.995493
699			80	20	0.995493
710	75		25		0.996473
771	33		66		0.997452
813		75	25		0.996473
947		33	66		0.997452
950	33			33	0.997753
951		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain