SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25595

Length: 1836 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25595

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pectate lyase [Prunus persica]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	pectate lyase	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	AmbAllergen	IPR018082	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQH9

Fln msg:

Fln protein: MKNPSILTCVFLIEILCVHGGVVPNPFGILVAENSREAEPTNGNTTAVEKDPDSIVQMVQRSIDNSTRRRELGYLSCGTGNPIDDCWRCDPNWQHHRKRLADCAIGFGRHAKGGKKGKTYVVTDHHDYDAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELIMNSFKTIDGRGVDVHIAYGPCITIQRVRNIIIHGIHVHDCKPAGNAMVRDSPTHFGWRTMCDGDGISIFGGSHVWVDHVSLSNCADGLIDAIMGSTAITISNSYFSHHNEVMLLGHRDSYTPDVKMQVTIAFNHFGEDLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFIAPANRWAKEVTKRVNQNMDEWKQWNWRSDGDLMLNGAYFTPSGAVASSAYAKASSMAARAAIHVGPLTQDAGVLHCRTGARC*

Protein Length: 431

Fln nts: ATGGGGGCATCAGAGTGAGAGAGAGAGCAGAGGCAATCACCACTAATGTTGGCCATGCTCTCGAGTCTCTCCTCATTCCCACGCTCTTCTTCTTGCTGTAGCTATTGCTTTGAATGCTAGCTTTTTCTTCTCGTTTTCATACTTTCTACTGCGTTTCATGTCATGGGAGAGTTTAGAACTGCAGCATCGCCTTTTCCTTCACACAAGATTTTCTATTATTCTTCACTTTTGAAGAATTGACTGTAGATTTGTGAGAACTAGTGAGTTCGGGGTACTAAG_-_ATGAAGAATCCGAGTATTTTGACCTGCGTGTTCTTGATCGAAATCCTCTGTGTCCATGGTGGTGTGGTACCAAATCCTTTTGGAATTCTGGTTGCAGAAAATTCAAGAGAAGCAGAGCCAACCAATGGCAATACCACTGCTGTGGAAAAAGATCCAGACAGCATAGTGCAGATGGTTCAAAGGAGCATTGATAACAGCACGAGGAGGCGAGAGCTGGGTTATCTGTCCTGCGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGCGATCCCAATTGGCAACACCACAGAAAACGCCTGGCAGACTGCGCCATTGGATTCGGCAGGCATGCCAAGGGAGGCAAAAAAGGGAAAACTTACGTGGTAACGGATCATCATGATTATGATGCGGTAAATCCTCGGCCGGGCACCCTGCGTCATGCGGTGATTCAGACAGAGCCCCTGTGGATTATTTTCCAGAGAGACATGGTCATCCAACTCAAGGAGGAGCTTATTATGAACAGTTTCAAGACAATCGACGGAAGGGGTGTCGATGTCCACATTGCATACGGGCCCTGTATCACCATTCAGCGTGTGCGTAACATTATCATCCATGGCATTCACGTTCACGACTGTAAGCCTGCAGGAAATGCTATGGTGAGGGACTCTCCGACGCATTTCGGATGGAGAACTATGTGCGATGGAGATGGGATCTCCATCTTCGGAGGAAGCCACGTTTGGGTGGACCATGTCTCCTTGTCCAACTGTGCAGACGGACTCATTGATGCCATCATGGGATCCACTGCTATTACCATCTCAAACAGCTATTTCAGTCATCACAATGAGGTGATGTTGTTGGGTCATCGTGATAGCTACACTCCCGACGTCAAAATGCAGGTGACTATTGCATTCAACCATTTTGGCGAAGATCTTATACAACGAATGCCAAGGTGCAGGCATGGATACTTCCATGTGGTAAACAATGACTACACTCACTGGGAAATGTACGCAATTGGGGGCAGTGCAAACCCCACAATCAACAGTCAAGGCAATAGATTCATCGCACCTGCAAATCGCTGGGCTAAAGAGGTAACAAAACGGGTAAACCAGAACATGGACGAATGGAAACAGTGGAACTGGAGATCGGACGGAGATCTGATGCTAAACGGTGCGTATTTCACGCCATCCGGAGCAGTGGCGTCTTCGGCGTATGCAAAAGCATCGAGTATGGCAGCGAGAGCTGCCATCCATGTCGGGCCGCTCACTCAGGATGCAGGCGTTCTCCACTGCAGGACAGGAGCTCGCTGCTAA___TGCCATGGCTGGTGTTTTGGGTGCTTTCCAAATTCTTTGTGTTTTATAGATAGATGATCATTCTGTTTTGTATTGTTTGGAGAGCGGCAGTTGATTCGATGATTAGCGCCTCCCCATTTTGTTTAGCAACCTCGGCGTGCAGGGTGTTGCATATAGATACCATCAATAAACTCCAACTCAAGCTTTTCATCTGGGAATGCAATTTTTTAGCGGCAGCAAAGGCAAGCGGAGATCCGTTGCGGTCGCTGTTGTATTTTATTTTGTGAT

Fln Alignment:

Contig25595___MKNPSILTCVFLIEILCVHGGVVPNPFGILVAENSREAEPTNGNTTAVEKDPDSIVQMVQRSIDNSTRRRELGYLSCGTGNPIDDCWRCDPNWQHHRKRLADCAIGFGRHAXXXXXXXTYVVTDHHDYDAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELIMNSFKTIDGRGVDVHIAYGPCITIQRVRNIIIHGIHVHDCKPAGNAMVRDSPTHFGWRTMCDGDGISIFGGSHVWVDHVSLSNCADGLIDAIMGSTAITISNSYFSHHNEVMLLGHRDSYTPDVKMQVTIAFNHFGEDLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFIAPANRWAKEVTKRVNQNMDEWKQWNWRSDGDLMLNGAYFTPXXXXXXXXXXXXXXXXXXXXIHVGPLTQDAGVLHCRTGARC
B8LQH9_______________MKNQSILTGMLLIGILCIHGDAAQKPFGSLVVENSGEAEPANGNTTAAEKDPDSIVQMVQRSIDNSTRRRELGYLSCGTGNPIDDCWRCDPNWENHRKRLADCAIGFGSHAQGGKKGKYYVVTDPSDFDAVNPLPGTQRHAVIQKEPMWIIFERDMVIQLKEELIMNSFKTIDGRGVNVHIAYGPCITIHRVRNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRPICDGDGISISRARHIWVDHVSLSNCADGLIDAIRGSTAITISNSYFTHHNEVMLLGHHDNYTADVHMQVTIAFNHFGEDLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPENRWAKEVTKRVNENKDEWKKWNWRSEGDMMLNGAYFTPSGAVASSAYAKASSLAARPSADVGPLTQDAGVLQCRSGARC

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
237		33		66	0.997452
267			33	66	0.997452
269			66	33	0.997452
275	33	66			0.997452
290		66	33		0.997452
756	57		42		1.0
771			42	57	1.0
777			85	14	0.993533
795	12	50		37	1.0
796		12	87		0.992554
798		87		12	0.992554
799			87	12	0.992554
918	40		60		1.0
969	16		83		0.994512
972		83		16	0.994512
984	83		16		0.994512
1035	16			83	0.994512
1238	40		60		1.0
1247		40		60	1.0
1304		25		75	0.996473
1335	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain