SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25592

Length: 1040 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene25592 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	charged multivesicular body protein 5 [Arabidopsis thaliana] gb\|AAF76370.1\| unknown protein [Arabidopsis thaliana] gb\|AAO64794.1\| At3g10640 [Arabidopsis thaliana] dbj\|BAF00173.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE74937.1\| charged multivesi	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	charged multivesicular body protein 5	-	-	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Snf7	IPR005024	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LND7

Fln msg:

Fln protein: MRRVFGAKKDQEPPPSVQDAAERINKRGDTVDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAALKSANKELKGSLKTMKIEDIDNMQDEMMDLMDISTEIQDSLGRSYSVPDDIDEDDLMGELDALEADMGSETQTDGVPAYLQPDRESDLDSELSLPSAPFGHATVPQANPQITDEFGLPAVPRASLRS*

Protein Length: 237

Fln nts: GTCAGGGCTGGAATGTTGTAGGGCTTACTTTCCCTCACTCAAATGAGGCGCGAAGCATTCGACTCCTTGGCTGGCGCTACAGGCCTTTTCTTCACTTGATCAACGAATTTATATGAGACCGGTCCTTCGGGTGGCTGTTAATGGCTGCGCATAGACCTTCTGGTTAATGTTTCGTAAATACATTCCGCAAGCCCTAGCTGCTTTAGCCTACAAGGGCTAGTTTTCCTGTTATTGATTTCTGGGCGAGAGGTGGCGCAGTCGAGGAGGTATTCCCTGGCAGGAAAG_-_ATGAGGAGAGTTTTTGGAGCCAAGAAGGACCAGGAGCCTCCTCCATCCGTTCAAGATGCTGCTGAAAGGATCAATAAAAGAGGTGACACGGTTGATGAAAAGGTTAAGAAACTTGATATTGAGCTTGCTAGATATAAAGAACAGATAAAGAAGACTAGGCCAGGTCCTGCTCAAGAGGCTATCAAAGCTCGGGCTATGAGGATACTCAAGCAAAAGAGGATGTATGAGGGACAGAGGGAAATGATTTACAATCAAACATTCAATCTTGATCAGGTTTCCTTTGCCACTGAGGGCATCAAGGATGCTCAGAATACGATGGCAGCCCTGAAATCTGCCAACAAGGAACTGAAAGGATCGCTTAAGACGATGAAGATTGAAGACATTGATAATATGCAGGATGAGATGATGGACTTAATGGACATAAGTACTGAAATCCAAGACTCACTTGGGAGAAGCTATAGTGTGCCTGATGACATTGATGAGGATGATCTAATGGGTGAGCTAGATGCGCTGGAAGCTGATATGGGTTCAGAGACCCAAACTGATGGGGTGCCTGCTTATTTACAACCTGATAGGGAGTCTGATCTAGATTCCGAATTGAGCCTGCCTTCAGCACCTTTTGGTCATGCCACAGTTCCACAAGCCAATCCACAGATTACCGATGAGTTTGGGCTGCCGGCTGTTCCAAGGGCCTCGCTTCGTTCATAA___GCAAGCACATTTTCCAAAACGACCTGTGTATGATATATATCTGGTCT

Fln Alignment:

Contig25592___MRRVFGAKKDQEPPPSVQDAAERINKRGDTVDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAALKSANKELKGSLKTMKIEDIDNMQDEMMDLMDISTEIQDSLGRSYSVPDDIDEDDLMGELDALEADMGSETQTDGVPAYLQPDRXXXXXXXXXLPSAPFGHATVPQANPQITDEFGLPAVPRASLRS
B8LND7_______________MRRVFGVKKDKEPPPSVQDAAERINKRGDTVDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAALKSANKELKGSLKTMKIEDIDNMQDEMMDLMDISTEIQDSLGRSYSVPDDIDEDELMGELDALEADMGSETQTDGVPAYLQPDKESDLDSELNLPSAPSGRATVPQANQQTTDEFGLPTVPRASLRT

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
468	85			14	0.993533
591	12		87		0.992554
600	87		12		0.992554
606		33		33	1.0
607		16		83	0.994512
612		20		80	0.995493
621	80		20		0.995493
625		80		20	0.995493
626			20	80	0.995493
630	80			20	0.995493
631	80			20	0.995493
635	20	80			0.995493
636	80		20		0.995493
642	25		75		0.996473
666		66		33	0.997452
681	33		66		0.997452
688		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain