SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25499

Length: 1984 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene25499
GCACTGAATTGTATGCATCATCCATGTGGGTTATTTTTCCATCCCATTTGATGCACTGACAATCCTGCATATTTCCTAGGTCTGCATCATCAGATCTTGTTTTAATTTTAGTTTAGGAGAGTGTAGGAGGGATTTTGTTTGTCCTCCTTGCTCTGTAATCAGAGGTGAGTGAGAGGTCAGTTTTTGAAGACCTCCTCTCTGGCACTTTTATTTATCAGTGCCCTCTGAAAAATAGTGAATAGTGGGTGTTTTAGTGGTAAGTTTCAGTTTAGTTGGGCTCTTCTGTACCTTTGAGTTTGAGTTATTGCAAGCCGTAGTTTTTCTATCTTTCTGTGTTTTCGCAGAGGCTGCAGGAGAATTTTGTTTTTGGCTGTTTGGAGAATTTTAGTAAAAGGATGGCCGGAGCGATGCAGAGTGAGTTTCCTTCGCATGTTCCTAGCATAAATGGTGGAGCTTTTTTTACCGATCCTGTAATTTATGAGGAACTGATGAAAGCAGTTGAACCTTATGCAGTGAGAAATTCAAAGCCAGAGTTGTCTGACAACGAGGATCTCGTAGGTGTTTCTGGCTCTTCTTCTTGCTTTTCATGGGCAGATCAGGAGCAGATACAGATGAGGCTTCTAGGCAGCAATTCTGCTAGAAATGTTCCGGAGATGTCAGCATGTGCACCCAATATTTCAGGCTCCTGGTCTGAATTGCTAATGAATGGATGCAGTAACGCTGGAGATGCGGCTTGGTACCCGAGTTTTCATGGGTCGGAAGCCAATAATCAGCAGCAATATGCATTCGTTCCAGACCGGGCTATGGATATGGGTTTGCAGTCTATGCCTTCATCTCAAATGGGTTCTTCTCAGTTGGGAGTCAATTCATCTCAGCCATTGAGCATATCTGAAATATATGAGCAGATTCAAGCCAATATACAGATGCAGAAGAAACAACAGATGGATCAGCTACAATTGCAGCTTCTCTTAGCAAAAAGCCACCATTCACAGCAAGTACTGGGGTCTCCAGCCTACCATTATCAGCAACAGCAGCAGCAGCTGAAACAATTGAGGGATTTATCTTTATCAAGAAACCTACTTGGGGCAAGAGCTCAGCCCATGAAACTTTCTGCTAAAAATGATTCAAAACTGGGTATTGCAAGGCCTGCCAAGCTCTACAGAGGAGTGAGACAGAGGCACTGGGGGAAATGGGTAGCAGAGATCAGATTACCTAGGAATAGAACCAGGCTCTGGCTTGGAACTTTTGACACAGCAGAAGAAGCAGCGTTTGCATATGACACAGCAGCCTACCAACTACGTGGTGAGTACGCAAGGCTTAATTTTCCGGACTTGAGGTATCTTTTGCTCTCAAATTCGGATAACGGTAGCCATAATGTTCTTTCGCCACCGGGTAATGCGTTATCTGTGCTGAAATCTTCTGTTGATGCAAAGCTCCAGGCAATTTGCCAGCGTTTATCCCAGGAAAATTCTTCAGAAAATCGTCTGATGGCACACAGTGCCAACAATGAAGCTATGGAGAATGTCAAGTGTGAAGTTTCTGGAAGCAGCAATAGCTCAACGATTTGTGGTGCAGAATCTGCTTCTACGTCACCCAGTAAATGTGAAGTCGATTCATCGATTTTGCAGAAGGCGCCCTCTTTCTCTTTTTTCGCTGAACTGGACGAGTGTCTCACCAAAATGCCTTCTTTGGACCCAGAAGTGATCCAGGACGTTCTGTCCTCTTAAATAGTGTTACATTTCCTGTGCATATATATATTTAGGCTGTCGGTTTATTAGGAGAGCCAAGGCTCTTAGCTGAGACCAAAGATGCACGTTTTGTAGCTGCATCGATGGCCATCAATATTGTAGCAGTGTCTAGAAATGTAGAAGTATAGGGAATAAATACAGCCCATTTGCAGGCTGGAGGATTTAGCTTGCTAATTCTTTTAGCTTCCAGAAACCTGCTGTACCTATATAGAATGTTTGCTTATATATTGTGGCAT

Ace file of the UniGene sp_v2.0_unigene25499

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dehydration-responsive element binding protein n=2 Tax=Aloe vera RepID=B9VJG2_ALOVR	-	-	3.0e-27	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	dre binding factor 2	-	-	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3		IPR004348	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUH3

Fln msg:

Fln protein: MAGAMQSEFPSHVPSINGGAFFTDPVIYEELMKAVEPYAVRNSKPELSDNEDLVGVSGSSSCFSWADQEQIQMRLLGSNSARNVPEMSACAPNISGSWSELLMNGCSNAGDAAWYPSFHGSEANNQQQYAFVPDRAMDMGLQSMPSSQMGSSQLGVNSSQPLSISEIYEQIQANIQMQKKQQMDQLQLQLLLAKSHHSQQVLGSPAYHYQQQQQQLKQLRDLSLSRNLLGARAQPMKLSAKNDSKLGIARPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAAFAYDTAAYQLRGEYARLNFPDLRYLLLSNSDNGSHNVLSPPGNALSVLKSSVDAKLQAICQRLSQENSSENRLMAHSANNEAMENVKCEVSGSSNSSTICGAESASTSPSKCEVDSSILQKAPSFSFFAELDECLTKMPSLDPEVIQDVLSS*

Protein Length: 445

Fln nts: GCACTGAATTGTATGCATCATCCATGTGGGTTATTTTTCCATCCCATTTGATGCACTGACAATCCTGCATATTTCCTAGGTCTGCATCATCAGATCTTGTTTTAATTTTAGTTTAGGAGAGTGTAGGAGGGATTTTGTTTGTCCTCCTTGCTCTGTAATCAGAGGTGAGTGAGAGGTCAGTTTTTGAAGACCTCCTCTCTGGCACTTTTATTTATCAGTGCCCTCTGAAAAATAGTGAATAGTGGGTGTTTTAGTGGTAAGTTTCAGTTTAGTTGGGCTCTTCTGTACCTTTGAGTTTGAGTTATTGCAAGCCGTAGTTTTTCTATCTTTCTGTGTTTTCGCAGAGGCTGCAGGAGAATTTTGTTTTTGGCTGTTTGGAGAATTTTAGTAAAAGG_-_ATGGCCGGAGCGATGCAGAGTGAGTTTCCTTCGCATGTTCCTAGCATAAATGGTGGAGCTTTTTTTACCGATCCTGTAATTTATGAGGAACTGATGAAAGCAGTTGAACCTTATGCAGTGAGAAATTCAAAGCCAGAGTTGTCTGACAACGAGGATCTCGTAGGTGTTTCTGGCTCTTCTTCTTGCTTTTCATGGGCAGATCAGGAGCAGATACAGATGAGGCTTCTAGGCAGCAATTCTGCTAGAAATGTTCCGGAGATGTCAGCATGTGCACCCAATATTTCAGGCTCCTGGTCTGAATTGCTAATGAATGGATGCAGTAACGCTGGAGATGCGGCTTGGTACCCGAGTTTTCATGGGTCGGAAGCCAATAATCAGCAGCAATATGCATTCGTTCCAGACCGGGCTATGGATATGGGTTTGCAGTCTATGCCTTCATCTCAAATGGGTTCTTCTCAGTTGGGAGTCAATTCATCTCAGCCATTGAGCATATCTGAAATATATGAGCAGATTCAAGCCAATATACAGATGCAGAAGAAACAACAGATGGATCAGCTACAATTGCAGCTTCTCTTAGCAAAAAGCCACCATTCACAGCAAGTACTGGGGTCTCCAGCCTACCATTATCAGCAACAGCAGCAGCAGCTGAAACAATTGAGGGATTTATCTTTATCAAGAAACCTACTTGGGGCAAGAGCTCAGCCCATGAAACTTTCTGCTAAAAATGATTCAAAACTGGGTATTGCAAGGCCTGCCAAGCTCTACAGAGGAGTGAGACAGAGGCACTGGGGGAAATGGGTAGCAGAGATCAGATTACCTAGGAATAGAACCAGGCTCTGGCTTGGAACTTTTGACACAGCAGAAGAAGCAGCGTTTGCATATGACACAGCAGCCTACCAACTACGTGGTGAGTACGCAAGGCTTAATTTTCCGGACTTGAGGTATCTTTTGCTCTCAAATTCGGATAACGGTAGCCATAATGTTCTTTCGCCACCGGGTAATGCGTTATCTGTGCTGAAATCTTCTGTTGATGCAAAGCTCCAGGCAATTTGCCAGCGTTTATCCCAGGAAAATTCTTCAGAAAATCGTCTGATGGCACACAGTGCCAACAATGAAGCTATGGAGAATGTCAAGTGTGAAGTTTCTGGAAGCAGCAATAGCTCAACGATTTGTGGTGCAGAATCTGCTTCTACGTCACCCAGTAAATGTGAAGTCGATTCATCGATTTTGCAGAAGGCGCCCTCTTTCTCTTTTTTCGCTGAACTGGACGAGTGTCTCACCAAAATGCCTTCTTTGGACCCAGAAGTGATCCAGGACGTTCTGTCCTCTTAA___ATAGTGTTACATTTCCTGTGCATATATATATTTAGGCTGTCGGTTTATTAGGAGAGCCAAGGCTCTTAGCTGAGACCAAAGATGCACGTTTTGTAGCTGCATCGATGGCCATCAATATTGTAGCAGTGTCTAGAAATGTAGAAGTATAGGGAATAAATACAGCCCATTTGCAGGCTGGAGGATTTAGCTTGCTAATTCTTTTAGCTTCCAGAAACCTGCTGTACCTATATAGAATGTTTGCTTATATATTGTGGCAT

Fln Alignment:

Contig25499___LSRNLLGARAQPMKLSAKNDSKLGIARPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTXXXXXXXXXXXXXXXXQLRGEYARLNFPDLRYLLLSNSDNGSHNVLSPPGNALSVLKSSVDAKLQAICQRL------------------SQENS-SENRLMAHSANNEAMENVKCEV--SGSSNSSTICG--------AESASTSPSKCEVDSSILQKAPSF---SFFAELDECLTKMPSLDPEVIQDVLSS
A9NUH3_______________MGRNPLGPRAQPMKLHSS-----GLSKAAKLYRGVRQRHWGKWVAEIRLPRDRTRLWLGTFDTAEEAAMAYDKAAYRLRGEYARLNFPHLKRHLEANS--------FAPWTGNSVLPSAVDAKLQAICQSLKLPMEKMSKTEESEEISCAYENSGSLGSVQDEDAKKNDVVSVKSETCESDSSDDSTITALNSAGESESPSASKSETQADTETDTLCSMPSFSASSIWAELDDYLLSIPSLDMDINWDDINS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
422		20		80	0.995493
636	14		85		0.993533
645	16		83		0.994512
676		16		83	0.994512
929		14	85		0.993533
1028	80		20		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1029	1041	CAG CAG CAG CAG C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain