SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25484

Length: 1440 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene25484 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	fasciclin-like arabinogalactan protein 19 [Arabidopsis thaliana] sp\|Q5Q0H2.2\|FLA19_ARATH RecName: Full=Fasciclin-like arabinogalactan protein 19; Flags: Precursor gb\|AAD39647.1\|AC007591_12 F9L1.13 [Arabidopsis thaliana] gb\|AAX23744.1\| hypothetical protein	-	-	6.0e-06	29%
FL-Next	sp=Fasciclin-like arabinogalactan protein 19; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	29%
Blast2go	fasciclin-like arabinogalactan protein	-	-	4.46382e-11	48%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q5Q0H2

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 367 - 248

Fln protein: MPMSRELLLRIKHSVMLFLLLFLLLAFLQMTALADDHLDPEKDEIQSVIRELKRSGYRAFANDLKRVYSQSLLSSRGSYTFFAPPDEALYSLRCHSKSSQEYMDAIKYHIVNAKLSYDISSHVPNGTRLDTLLQSHSIRLTTLLAPGDQEGQTETETLMVNNVNVSSPNLYFDNRFAAHGVAALLKPSAVDGSSNCGVSEFWKCVHEFFALSLGKSMPEIGGQEDSSTAPMQLPDHFFGKSMPETGGHEDSSTGPMLPALGASPRDEVCANGSMSSKKVDEVMCTNTSTSVGEQFSGVESSGDHKYHPRRHPDDDDRHHHGEDRHSNLQHSDSPPPLALPSPPSRPSKTFTVSFSVSLSFFRHDHE*

Protein Length: 368

Fln nts: ACATGGGGAACCTATTCCTACAGTGTCTGCCATTATTTTCTGTTATTGCTTTCAGTTGATCATTCGCTCTTTGCTCTGCTGCAACTACATCCAGGAAGAAGAAGGAGAAACAAAGAAGTTAGCTCTGACATCCGTTTCACTTCACAGAAA_-_ATGCCGATGTCGAGGGAATTACTGTTGCGGATTAAGCATTCTGTGATGCTGTTTCTTCTGCTGTTCTTGCTACTTGCGTTCTTGCAGATGACGGCGCTGGCTGACGACCACCTAGATCCGGAAAAGGACGAGATTCAGTCTGTGATCAGAGAGCTGAAAAGGTCCGGGTACCGTGCCTTCGCTAACGATCTTAAAAGGGTTTACAGTCAATCCCTCCTCTCCTCTCGGGGTTCATACACATTCTTCGCTCCGCCAGACGAAGCTCTCTACTCCCTGCGTTGTCATTCTAAATCGTCGCAAGAATACATGGACGCCATTAAGTATCACATTGTGAACGCCAAGTTGTCGTACGACATTTCCAGCCATGTGCCCAACGGGACACGCCTCGATACGCTTCTCCAGAGTCACAGCATCAGGCTCACGACCTTGCTGGCTCCGGGCGACCAGGAGGGCCAGACCGAGACCGAGACCCTCATGGTTAACAATGTAAACGTCTCCTCCCCGAATCTATATTTCGACAACCGCTTTGCCGCTCATGGAGTCGCCGCGCTTCTCAAGCCCTCAGCAGTCGACGGATCGTCCAATTGCGGCGTCTCTGAATTTTGGAAATGCGTCCACGAGTTCTTTGCCCTTTCTTTAGGCAAGTCGATGCCGGAAATTGGTGGGCAAGAGGACTCCTCTACGGCGCCAATGCAGCTGCCTGACCATTTTTTTGGCAAATCGATGCCGGAAACTGGTGGGCATGAGGACTCCTCTACCGGGCCAATGCTGCCTGCCCTTGGCGCATCTCCGCGTGATGAAGTATGTGCAAACGGCTCCATGAGCTCCAAGAAAGTAGACGAAGTCATGTGCACTAATACCTCTACCTCAGTCGGAGAGCAATTTAGCGGCGTTGAATCCTCTGGAGACCACAAGTACCACCCCCGCCGCCATCCCGACGACGACGACCGCCACCATCATGGTGAAGACCGTCATTCCAATCTGCAGCATTCCGATTCCCCACCCCCATTAGCATTACCATCACCGCCATCACGACCATCGAAAACATTCACTGTTTCATTTTCAGTCTCACTATCATTCTTCCGCCATGATCACGAGTGAACAGTGTATGCCAAGAAATGTTCTGTACTTAATGTTGCAGAAATCTTTCAGAAATGTTGCATTGAGGGTCGCTGATTTCAGCTGACTTAACGTCAAGACTATTGGAATAATTATGTTTATGCTCCAGAGGGCAATTGTACGTATTTCAATTAATTTTTTCAAGATATCAATGGCTTTCATATTAAATAA

Fln Alignment:

Contig25484___DEIQSVIRELKRSGYRAFANDLKRVYSQSLLSSRGSYTFFAPPDEALYSLRCHSKSSQEYMDAIKYHIVNAKLSYDISSHVPNGTRLDTLLQSHSIRLTTLLAPGDQEGQTETETLMVNNVNVSSPNLYFDNRFAAHGVAALLKPSA
Q5Q0H2_______________EELERAIAILRVRGRALFANAIITSDLLFDLLSDESLTLFAPTDSMLFDLDM-THSLPFYVSTLRLHSVPLRLSLSGLRSLPNSSSLPTLLPSHRLLLT--------KHSSSNDSIFLDGVQLLIPGLFDGQHIAVHGLADLLPLTA

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
181	85		14		0.993533
244		16		83	0.994512
283			11	77	0.968132
284			77	22	0.999999
363		55	44		1.0
560		10		90	0.90298
569		10	90		0.90298
570	80	20			0.999996
571		20		70	0.999998
572	20			80	0.999996
576	12	87			0.992554
635		16		83	0.994512
728			87	12	0.992554
781			50	50	1.0
800		50		50	1.0
805	83		16		0.994512
924		83	16		0.994512
1041	16		83		0.994512
1240		66		33	0.997452
1428	85	14			0.993533
1429		14	85		0.993533
1430		14	85		0.993533
1431	14			14	0.984337

SSRs (tot: 1)

Start position	End position	Sequence	Length
343	355	GTC GTC GTC GTC G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain