SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25435

Length: 1484 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25435

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DOF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIX8_MALDO	-	-	2.0e-34	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	f-box family protein	-	-	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Thiolase	IPR002155	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Zinc finger, Dof-type	IPR003851	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNI1

Fln msg:

Fln protein: MVLSSVEVCMDPADWTQSFLQNSALKLPEDLMPCPRAPPMMERRIKPQTEQALKCPRCDSTNTKFCYYNNYNLSQPRHFCKTCRRYWTKGGSLRSVPVGGGCRKNSKRNNSNNNNGKRSSGEACSSATGSDQLSPSLAGVSNDCKYYNGDGEELIGINYVNSLRQVDHEAAFAGCSINSGVYGIQANDHQSSQSFQPYHLPTALQSLQGSLILGSDQAPNGFNQAANRGDLGLVQQQAAGTVPYDREAYHPYINMSLDQSDGHSRAPQQHKGNNIIEHPPQGIVYEGGYWNSGVWPDLSAYGLSNINPNSM*

Protein Length: 313

Fln nts: CTGTTTTCTCTGCTGCTTCTTCTTACTTTTGATCTGATTCGCATATCCAGTTTGCTTTAATTCATTCCTCCTGCAAATTTTTTGCCTTCGGCTTCGGTTTTACAGCAAACTCTGTGGCCCTCAAATGAGAGATTCTTACAACTCTGAGAAAAGAAGACACGGCAATCTTTTATTGATATACATGTGTCTGCTGATTAACGCCAGAACGTGACCTGTGAAGAATTGGGGGCAGATCTATAGATCAGTGGTTGGAAATTATTTAGGGTGTCTTTTCACTAGCAAA_-_ATGGTGCTCAGTTCTGTTGAAGTTTGCATGGATCCCGCCGACTGGACCCAGAGTTTCTTGCAAAACAGTGCACTAAAGCTTCCAGAGGACCTCATGCCATGCCCAAGGGCACCACCTATGATGGAACGGAGAATCAAACCACAGACTGAACAGGCCTTGAAATGCCCCAGATGTGATTCTACAAACACAAAATTCTGTTACTATAACAACTACAATCTTTCACAACCTCGCCATTTCTGCAAGACCTGCAGGCGCTACTGGACTAAAGGAGGCTCTCTGCGCAGTGTTCCCGTTGGTGGAGGCTGCAGAAAGAACAGCAAGCGCAACAATAGCAACAACAACAATGGCAAGAGATCCAGTGGCGAAGCATGCAGCTCAGCAACAGGGAGCGATCAGCTGTCTCCTTCCCTGGCTGGAGTCTCCAATGATTGCAAGTACTACAATGGTGATGGCGAGGAGCTAATTGGCATTAACTACGTGAACTCGTTGAGGCAGGTGGATCATGAGGCAGCGTTTGCAGGTTGCAGTATTAACTCCGGTGTCTATGGGATTCAGGCAAATGACCACCAGTCCTCTCAGAGTTTCCAGCCATACCACCTTCCAACAGCTCTTCAATCTCTGCAAGGAAGTTTAATTCTGGGCTCAGATCAGGCACCCAATGGTTTCAATCAGGCTGCCAACAGAGGAGATCTAGGTCTAGTACAGCAACAAGCAGCTGGTACTGTTCCCTATGACAGAGAAGCATACCATCCTTACATAAATATGTCACTTGATCAATCAGATGGGCATTCTCGAGCCCCTCAGCAGCACAAGGGCAATAATATTATCGAACACCCACCACAGGGAATAGTGTACGAAGGTGGGTATTGGAACAGTGGGGTTTGGCCAGATCTCTCAGCTTATGGGCTCTCCAACATAAACCCTAATTCAATGTAG___AGAGAGGCCTGACTTGTTGTGAAGTTAACCCCAGGATTTGGCTAAACCATAACACATTTCTCATCTCGTTAAGTGTATATTCCGCAACACAGTTTGCTAAAGGATTTCACCAAAGGTCATATCAGAATTTCAAGTCTTCATATAACAGCAGGTCAAGTGACAGATTTTCTGGTCATCTCCTATTAATAACTGTTGGAATAGAATGTCAGCTGTTTAGTGTGTTCATAACAATACTTCAATAGGATTCAACTCATGTATTGGAAGG

Fln Alignment:

Contig25435___DLMPCPRAPPMMERRIKPQTEQA-LKCPRCDSTNTKFCYYNNYNLSQPRHFCKTCRRYWTKGGSLRSVPVGGGCXXXXXXXXXXXXXXXXXXXEACSSATGSDQLSPSLAGVSNDCKYYNGDGEELIGINYVNSLRQVDHEAAFAGCSINSGVYGIQANDHQSSQSFQPYHLPTAXXXXXXXXXXXXDQAPNGFNQAANRGDLGLVQQQAAGTVPYDREAYHPYINMSLDQSDGHSRAPQQHKGNNIIEHPPQGIVYEGGYWNSGVWPDLSAYGLSNINPNSM
A9NNI1_______________DMMDSYPPRQLLDRRLKPQGDQEILKCPRCDSTNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGSLRSVPVGGGCRKNSKRNNNSNNNGKRSNGEACSSTTGSDQLSPSLGGVSNDCKYYNGDGEELIGINYVNSLRQVDHEAAFAGCSINSGVYGIQANDHQSSQSFQPYHLPTALQSLQGSLI----QAPNGFNQAANRGDLGLVQQQAAGAVSYDREAYHPYINMSLDHSDGHSRAPQQHKSNNIIENPPQGLVYEGGYWNGGVWPDLSAYGLSNINPNSM

SSRs (tot: 1)

Start position	End position	Sequence	Length
616	627	CAA CAA CAA CAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain