SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25415

Length: 1352 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene25415 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9I6D4_POPTR	-	-	50%
FL-Next	tr=Chromatin remodeling complex subunit; subsp. trichocarpa).	-	-	54%
Blast2go	tata-binding protein-associated factor 172-like	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9I6D4

Fln msg: Distance to subject end: 1686 aas, your sequence is shorter than subject: 369 - 2045

Fln protein: MAQQSSRLQRLLTLLDTGSTQTTRRTAARQIGEIAKLHPQDLSALLKKVSQYLRSKNWDTRVAAAQAIGAIAENVKHISINEIRDNAESELLKLGIDQNIKDLMVASWNLVSNSPTGLSFSSLDINKVLEFGGALLASGGQEYDIAIDNSKNSAERLARQKENLSRRLGLDVCEDYMDVNDMIRDEDLMVHKLPSHGNGAQHKYCAAQSGTQHIQKLVTNMVPGYFPRKLSARERNLLKRKAKVNVNHSKGWCDDDDTEEPVPKNKVTVKPVSMEQHPKNNKVLMERMVEEESLEQPSDGRWPFIYFVEQLIHDIFDPIWEIRHGSIMALREILSYQAASAGVSLPDLNTKGAWRHEMEENKMNHSLKR

Protein Length: 370

Fln nts: TTTCGGTTAATCATGCACAAGCATTGCTTATCCCGTTGGCTCCAAGGGCTTCTAGCATAATGTGCGAGAAAATGCACTAATTTCTGGACCGGTTATTGAATACGAGGGTTTCGGTTCGTAAAATGTTCAATTAGCCGTCTCTTGCGTCAGAAGCGGCAACATTAGGGGTCCTTGAAGGATTTTGTTGCCCGTGCTTGCTCCGGAAGCCAGCTCGAATGAAATACAGCGTAAATTTATTGACGTT_-_ATGGCTCAGCAGTCGTCTCGTCTTCAACGTCTGCTCACGCTCCTGGATACTGGCTCGACGCAGACAACGAGGCGTACAGCTGCACGGCAGATAGGAGAAATTGCAAAACTGCACCCCCAGGATCTAAGTGCACTCTTGAAGAAGGTTTCTCAGTATCTTCGAAGCAAGAATTGGGATACAAGGGTTGCTGCAGCTCAGGCTATTGGTGCCATTGCAGAAAATGTCAAACATATATCCATTAATGAAATCAGAGACAATGCTGAATCTGAGTTGTTAAAATTGGGTATCGATCAGAATATTAAAGACCTTATGGTAGCAAGTTGGAATTTGGTCTCAAATTCTCCAACAGGTCTTTCTTTTAGCAGCTTGGACATAAATAAAGTCCTGGAATTTGGAGGTGCATTGCTTGCATCAGGAGGACAGGAATATGATATTGCAATAGATAACAGTAAGAATAGTGCTGAGCGCTTGGCTCGTCAGAAGGAAAATCTTAGCCGTCGATTAGGATTAGATGTCTGTGAGGATTACATGGATGTTAATGATATGATACGAGATGAGGATCTCATGGTGCATAAATTGCCTTCCCATGGAAATGGAGCACAGCATAAATACTGTGCAGCTCAATCTGGCACCCAGCATATTCAGAAACTTGTCACAAATATGGTTCCAGGATATTTTCCTAGGAAATTAAGTGCAAGGGAACGTAATTTGTTGAAACGCAAAGCCAAGGTCAATGTTAACCACTCAAAAGGTTGGTGTGATGATGATGACACTGAGGAACCAGTTCCAAAGAATAAAGTGACTGTAAAACCTGTATCGATGGAACAACACCCCAAAAACAACAAGGTTTTAATGGAGCGTATGGTTGAAGAAGAGAGTCTAGAGCAACCCAGTGATGGGAGATGGCCATTTATATACTTCGTAGAGCAGCTTATTCATGATATATTTGATCCAATTTGGGAGATACGTCATGGAAGCATAATGGCTTTGAGAGAAATTTTGAGTTACCAGGCAGCATCTGCGGGAGTGTCATTGCCTGATTTAAACACTAAAGGTGCATGGCGTCATGAAATGGAAGAGAACAAAATGAACCATTCGCTCAAACGGG

Fln Alignment:

Contig25415___DTGSXXXXXXXXXXQIGEIAKLHPQDLSALLKKVSQYLRSKNWDTRVXXXXXXXXXAENVKHISINEIRDNAESELLKLGIDQNIKDLMVASWNLVSNSPTGLSFSSLDINKVLEFGGALLASGGQEYDIAIDNSKNSAERLARQKENLSRRLGLDVCEDYMDVNDMIRDEDLMVHKLPSHGNGAQHKYCAAQSGTQHIQKLVTNMVPGYFPRKLSARERNLLKRKAKVN-VNHSKGWCDDDDTEEXXXXXXXXXXXVSMEQHPKNNKVLMERMV------EEESLEQPSDGRWPFIYFVEQLIHDIFDPIWEIRHGSIMALREILSYQAASAGVSLPDLNTKGAWRHEMEENKMNHSLKR
B9I6D4_______________DTGSTQATRLTAAKQIGDIAKSHPQDLHSLLKKVSQNLHSKNWDTRVAAAHAIGAIAQNVKHTSLTELFASVETKMSEIGVSGHVEDL-VACPNFHSQIISNGLFRSFDMNKVLEFG-ALLASGGQEYDIANDNSKNPRERLARQKQNLRRRLGLDVCEQFMDVNDVIKDEDLVVHRPESQRNGLDHRFYKHPS-VHNIQQLVASMVPSVISKRPSARELNLLKRKAKINSKDQVKSWSEDGDTE--------------VACPQKTERVLDDQALKTADADEEDNLEHDGDGRWPFHGFVEQLIVDMFDPVWEVRHGSVMALREIVTHHGGSAGLVVPDLSLDGA-LDELREREYSNAIKR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
188	33		66		0.997452
845	87		12		0.992554
916		10	90		0.90298
1225		10		90	0.90298
1226		10	90		0.90298
1227	90	10			0.90298
1229		90		10	0.90298
1318	75	25			0.996473
1319	75	25			0.996473
1321	25		75		0.996473
1322			75	25	0.996473
1334		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
339	350	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain