SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25336

Length: 478 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene25336
CGTCGTGACCTTGGCTGTCACTCAGTCTTGATTGGTTGTGTTTTGTTCCTTGTTTGGCGGAGAGGGGGATCGGCTCCCTCGAAGCCGCCGGAGAAGCCAACTCCCCTGGTGAAAGAAGAGGAAGAAGAGGAGGAGGATGATTCCGGAAAGAAGAAAGTGACGGTTTTCTTTGGGACTCAGACCGGCACGGCTGAAGGATTTGCCAAGGTAGGTTCCAGATTTGTTTTGTCTTGCCTTCAAAATGAAAATCCAGTGAAAGATTTTAGCGTTAAAGCTTGTTAATACGCGGTCTTTGGTTTAAATCCCAAGAGATGCTCGTACTTTTACAGCCCTTTTGCTTCCCGCACTTTGTATTTGTTACAAAAAGACGGTCCTGGTACGGAATCGTCTTAGCGACGTACCCTGGATATCATTATTATACTTCGCTTATGAGCGGTCCTCGTGTATCCGTTAATTCCACATAATTAATAAAATTAGT

Ace file of the UniGene sp_v2.0_unigene25336 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADPH--cytochrome P450 reductase n=1 Tax=Pseudotsuga menziesii RepID=Q40916_PSEMZ	-	-	4.0e-18	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	cytochrome p450 reductase	-	-	1.17996e-21	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADPH--hemoprotein reductase.	EC:1.6.2.4	-	1.17996e-21	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	phenylpropanoid metabolic process	GO:0009698	Biological Process	1.17996e-21	77%
Blast2go	NADPH-hemoprotein reductase activity	GO:0003958	Molecular Function	1.17996e-21	77%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	1.17996e-21	77%

Source	InterPros	Term	Type	Identity
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3	FAD-binding, type 1	IPR003097	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3		IPR015702	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9J0

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 20 aas, your sequence is shorter than subject: 94 - 137

Fln protein: RRDLGCHSVLIGCVLFLVWRRGGSAPSKPPEKPTPLVKEEEEEEEDDSGKKKVTVFFGTQTGTAEGFAKVGSRFVLSCLQNENPVKDFSVKAC*

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTTGATTGGTTGTGTTTTGTTCCTTGTTTGGCGGAGAGGGGGATCGGCTCCCTCGAAGCCGCCGGAGAAGCCAACTCCCCTGGTGAAAGAAGAGGAAGAAGAGGAGGAGGATGATTCCGGAAAGAAGAAAGTGACGGTTTTCTTTGGGACTCAGACCGGCACGGCTGAAGGATTTGCCAAGGTAGGTTCCAGATTTGTTTTGTCTTGCCTTCAAAATGAAAATCCAGTGAAAGATTTTAGCGTTAAAGCTTGTTAA___TACGCGGTCTTTGGTTTAAATCCCAAGAGATGCTCGTACTTTTACAGCCCTTTTGCTTCCCGCACTTTGTATTTGTTACAAAAAGACGGTCCTGGTACGGAATCGTCTTAGCGACGTACCCTGGATATCATTATTATACTTCGCTTATGAGCGGTCCTCGTGTATCCGTTAATTCCACATAATTAATAAAATTAGT

Fln Alignment:

Contig25336___SVLIGCVLFLVWRRGGSAPSKPPEKPTPLVKXXXXXXEDDSGKKKVTVFFGTQTGTAEGFAKVGSRFVLSCLQNE
D5A9J0_______________AILVACVLFRVWRRGGSAPWKPSEK-------LKEDEEDDSGKNKVTVFFGTQTGTAEGFAKVRSGFVSSFLSNE

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
114	25			75	0.996473
115		25		75	0.996473
116	25			75	0.996473
360		75	25		0.996473
361	25	75			0.996473
362			25	75	0.996473
363		75		25	0.996473
364			25	75	0.996473
365	25			75	0.996473
367	25			75	0.996473
368			25	75	0.996473
369		25		75	0.996473
377			75	25	0.996473
378		25	75		0.996473
382	25			75	0.996473
383		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain