SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25274

Length: 621 nt

Origin of reads: Biogeco2 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25274

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PASTICCINO 2 n=1 Tax=Brassica rapa subsp. pekinensis RepID=B2MWR3_BRARP	-	-	4.0e-30	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	3-hydroxyacyl- dehydratase pasticcino 2	-	-	0.0	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Enoyl-CoA hydratase.	EC:4.2.1.17	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid elongation in mitochondria	00062	84%
Blast2go	Fatty acid metabolism	00071	84%
Blast2go	Valine, leucine and isoleucine degradation	00280	84%
Blast2go	Geraniol degradation	00281	84%
Blast2go	Lysine degradation	00310	84%
Blast2go	Benzoate degradation	00362	84%
Blast2go	Tryptophan metabolism	00380	84%
Blast2go	beta-Alanine metabolism	00410	84%
Blast2go	alpha-Linolenic acid metabolism	00592	84%
Blast2go	Aminobenzoate degradation	00627	84%
Blast2go	Propanoate metabolism	00640	84%
Blast2go	Butanoate metabolism	00650	84%
Blast2go	Limonene and pinene degradation	00903	84%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell division	GO:0051302	Biological Process	84%
Blast2go	negative regulation of peptidyl-tyrosine phosphorylation	GO:0050732	Biological Process	84%
Blast2go	cell differentiation	GO:0030154	Biological Process	84%
Blast2go	negative regulation of developmental growth	GO:0048640	Biological Process	84%
Blast2go	enoyl-CoA hydratase activity	GO:0004300	Molecular Function	84%
Blast2go	cytosol	GO:0005829	Cellular Component	84%
Blast2go	integral to membrane	GO:0016021	Cellular Component	84%
Blast2go	fatty acid elongase complex	GO:0009923	Cellular Component	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
205		33		66	1.0
206		33		66	1.0
230		33	66		0.997452
329	20			80	0.995493
335	75		25		0.996473
469	33	66			0.997452
470	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain