SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25235

Length: 1405 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene25235 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamine synthetase cytosolic isozyme n=2 Tax=Pinaceae RepID=GLNA_PINSY	-	-	94%
FL-Next	sp=Glutamine synthetase cytosolic isozyme; Pinus sylvestris (Scots pine).	-	-	99%
Blast2go	glutamine synthetase	-	-	93%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine synthetase, beta-Grasp	IPR008147	-	-
Sma3	Glutamine synthetase/guanido kinase, catalytic domain	IPR014746	-	-
Sma3	Glutamine synthetase, catalytic domain	IPR008146	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: P52783

Fln msg:

Fln protein: MSSVLTDLLNLDLSDVTEKVIAEYIWIGGSGMDMRSKARSLSGPVSSVKELPKWNYDGSSTGQAQGHDSEVILYPQAIFRDPFRRGKHILVICDAYSPNGTAIPSNKRAAAAKIFNEKAVIDEETWYGLEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDMVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGISAADELWCARFIMERITEKAGVVLSFDPKPIEGDWNGAGCHTNYSTKSMRKEGGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP*

Protein Length: 359

Fln nts: GGAGATAAATTCATTCCACATTCAATTCTCTCCTTCCCTCTGGTTTGTTTTGGAGAGTGGCC_-_ATGTCGAGCGTATTAACAGACCTTCTCAACCTTGACCTGAGCGACGTGACAGAGAAGGTCATTGCGGAGTATATATGGATTGGAGGATCAGGAATGGATATGCGCAGTAAAGCCAGATCTCTGTCAGGACCTGTGAGTAGCGTTAAAGAGCTTCCCAAATGGAACTATGATGGCTCCAGCACTGGACAGGCTCAAGGACATGACAGCGAAGTCATTCTATATCCACAAGCTATCTTCCGTGATCCATTTCGCCGAGGAAAGCACATTTTGGTAATCTGTGATGCCTACTCTCCTAATGGGACTGCTATTCCTTCCAACAAGAGGGCTGCAGCAGCGAAAATTTTTAACGAAAAGGCGGTTATTGATGAAGAGACATGGTACGGGCTTGAACAAGAATATACACTGTTGCAAAAGGACGTCAAATGGCCTCTTGGCTGGCCAATTGGTGGCTACCCCGGTCCTCAGGGCCCATATTACTGTGGAGTTGGAGCTGACAAAGCCTGGGGACGTGACATGGTTGATGCCCATTATAAGGCTTGTCTCTATTCAGGAATCAATATCAGTGGCATCAATGGAGAAGTCATGCCAGGGCAGTGGGAATTTCAAGTAGGTCCGTCAGTGGGTATCTCAGCAGCAGATGAGCTGTGGTGTGCTCGTTTTATTATGGAGAGGATTACAGAAAAGGCGGGTGTCGTTCTGTCCTTTGATCCCAAGCCAATTGAGGGGGACTGGAATGGTGCTGGATGCCACACAAATTACAGCACCAAGTCCATGCGCAAGGAGGGAGGCTTCGAAGTAATTAAGAAAGCAATAGAAAAACTGAAGTTGAGGCATAAGGAGCATATTTCTGCCTATGGAGAGGGCAATGAGAGACGCCTCACTGGTCGGCACGAGACAGCAGACATGAATACCTTTTCCTGGGGTGTTGCAAATCGAGGAGCTTCAGTTAGAGTGGGCCGGGACACAGAAAAAGAAGGAAAAGGTTATTTTGAGGACCGTCGACCTGCTTCAAACATGGATCCATACATAGTGACTTCTATGATTGCTGAGACGACCATTCTATGGAAACCTTAA___ATTACAAAGTGGAGGCCAGTTACACGCGTGGTCGTGGTGCTTTGCTTTGGAGGCCAGCGTCACTGATAAGCTATATGTATGTAAATGTGATGCCAATGTTTAAGTAGGGTGGTAACTTTGCTTTGGTTGTGGGTAGACCTGTATTTGTTTTACTTGTAATATGGCGAGGGCTTCGAAAGACTCTTTTACCTTTGTTTCTTCCGTTGTGGAAGATGTATTCGACAAATTGTTTAGTATGTTTGAATATGATGATATTTTCTTTGTATTAG

Fln Alignment:

Contig25235___MSSVLTDLLNLDLSDVTEKVIAEYIWIGGSGMDMRSKARSLSGPVSSVKELPKWNYDGSSTGQAQGHDSEVILYPQAIFRDPFRRGKHILVICDAYSPNGTAIPSNKRAAAAKIFNEKAVIDEETWYGLEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXGADKAWGRDMVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGISAADELWCARFIMERITEKAGVVLSFDPKPIEGDWNGAGCHTNYSTKSMRKEGGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP
P52783_______________MSSVLTDLLNLDLSDVTEKVIAEYIWIGGSGMDMRSKARSLSGPVSSVKELPKWNYDGSSTGQAQGHDSEVILYPQAIFRDPFRRGKHILVICDAYSPNGTAIPSNKRAAAAKIFNEKAVSDEETWYGLEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGISAADELWCARFIMERITEKAGVVLSFDPKPIEGDWNGAGCHTNYSTKSMRKEGGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain