SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25231

Length: 1123 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25231

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	sulfotransferase family protein [Arabidopsis thaliana] emb\|CAB72146.1\| sulfotransferase-like protein [Arabidopsis thaliana] gb\|AAT70444.1\| At3g45080 [Arabidopsis thaliana] gb\|AAU45228.1\| At3g45080 [Arabidopsis thaliana] gb\|AEE77989.1\| sulfotransferase fam	-	-	42%
FL-Next	sp=Flavonol sulfotransferase-like; Arabidopsis thaliana (Mouse-ear cress).	-	-	45%
Blast2go	protein	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Sulfotransferase domain	IPR000863	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3		IPR005132	-	-
Sma3	Peptidase C50, separase	IPR005314	-	-
Sma3	Small GTPase superfamily, SAR1-type	IPR006687	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR014734	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Ribosomal protein L7Ae/L8/Nhp2 family	IPR018492	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
608	83		16		0.994512
730	17		82		1.0
835		40	40		1.0
838	88		11		0.923564
843	77		22		0.999999
896		85		14	0.999981
927			66	33	1.0
943	90			10	0.90298
944	90			10	0.90298
945	90	10			0.90298
948	90		10		0.90298
949		90		10	0.90298
950		90		10	0.90298
955	10			90	0.90298
957	10	90			0.90298
959	10	90			0.90298
960		10	90		0.90298
961		10		90	0.90298
975	22		77		0.999999
1002	33			66	1.0
1014	75		25		1.0
1026		25		75	1.0
1049		12		87	0.992554
1050			87	12	0.992554
1069	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain