SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25226

Length: 772 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25226

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative ubiquitin-specific protease [Oryza sativa Japonica Group]	-	-	61%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 15; Arabidopsis thaliana (Mouse-ear cress).	-	-	60%
Blast2go	protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	78%
Blast2go	fruit development	GO:0010154	Biological Process	78%
Blast2go	flower development	GO:0009908	Biological Process	78%
Blast2go	leaf development	GO:0048366	Biological Process	78%
Blast2go	protein deubiquitination	GO:0016579	Biological Process	78%
Blast2go	cell proliferation	GO:0008283	Biological Process	78%
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Impact, N-terminal	IPR001498	-	-
Sma3	Zinc finger, MYND-type	IPR002893	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
534		80		20	0.995493
684	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain