SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25172

Length: 1321 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene25172 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dof domain zinc finger DNA-binding protein n=1 Tax=Picea abies RepID=Q14DX9_PICAB	-	-	5.0e-31	52%
FL-Next	sp=Dof zinc finger protein DOF2.3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	f-box family protein	-	-	6.92407e-34	72%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	Zinc finger, Dof-type	IPR003851	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3		IPR012335	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O22967

Fln msg:

Fln protein: MVAVNAEIMPKFEGKSAKSLDSTFKLFGRTIAVKNPCDSSSNGIHVDGIPAEAVNSAVSKASETHHHDEKQKQNEDSEKVGKKPTKLVPCPRCESMDTKFCYFNNYNVNQPRHYCRRCQRYWTAGGSLRNVPVGAGRRKTSPASELITGRSWMTLKLVGMMCRARLLVGILINWSRLSHFIPNSRNLERA*

Protein Length: 192

Fln nts: AATGTAAACCACTTGTAATCCGTTTCCCCATCTCCCCAAAAAGCTGTAAAACGGTATATATAGAGCGCTCTCCAGTATAACATTTGGGATTGATTGTTTTCTGTTAGAAATTCCCATCATCCCTCTGTGTCTTCCTCCGTTTCAATCCAGAGACTGTTTTT_-_ATGGTGGCTGTAAATGCTGAAATAATGCCCAAATTCGAAGGGAAGTCTGCGAAATCCCTGGATTCAACATTCAAGCTGTTCGGCAGAACGATTGCTGTGAAAAATCCCTGTGATAGCAGCAGCAATGGTATTCATGTCGATGGGATTCCAGCTGAAGCAGTGAATTCAGCAGTCTCCAAGGCTTCTGAAACGCATCATCATGATGAGAAACAGAAGCAGAATGAGGATTCAGAGAAGGTGGGTAAAAAGCCCACAAAGCTTGTGCCCTGCCCTCGCTGCGAGAGCATGGATACCAAATTTTGCTATTTCAATAACTATAATGTCAACCAGCCTCGGCATTATTGCAGGAGATGCCAGAGATACTGGACTGCTGGTGGGTCTCTGAGGAATGTGCCGGTTGGGGCTGGTAGAAGGAAAACAAGCCCTGCTTCGGAATTAATCACAGGCAGATCATGGATGACACTGAAACTGGTTGGAATGATGTGCAGGGCCAGGCTTCTCGTGGGAATTCTGATAAATTGGTCAAGGTTGAGCCATTTTATCCCGAATTCGAGAAATTTAGAGAGGGCTTGA___ATGAAGCGGCAACGCTGAAAGAAGGTAACTCTAAACCCCAATCCAAAATCCAATCCCAATTTGACGATTATTCACATCATAGTACAGTGAATTTGGCTAGAGAAAAAGTGGGTAAGGAGGTCTTGTTTGGTTCTGGGAATCAAGTGGGTGCCATGGGATGGCCTGGGAATTCTACCCATTTGGCCAAAGAGCCTGGGAATTCTACGCATGTGGCCAACGAGCCTGGGAATTTTACCCATATGGCTAAAGAGCTAGAAAGTGTTCAGAAACCCAGCTGTTCAAGTGAGAAAACCCAGACAAGTGCCACCAAGGCAGATTCGGCTGAGCCTGTGGATGACCTGACCTCTGATTCAAATCTCAAATCAGAACCCAAAAATATGAGTCCAGACGGGTCTTCTTCGTCTTCTTCTTCTATGAATTATACAGGGAGTCCTTGGCCTGTGTATTACAATGGATGTTGGGGAAGCTTTCCTCCAGGTGTTGAGGGCTCTGAGAAAAATAGGGTGCCCTGGTACACACCAGGTACAGGATTTTTTCCAACAGGTTTTAACTGGCCTGTGCCTTCTGGAGTAATGTGGGGCTTGCCT

Fln Alignment:

Contig25172___KLFGRTIAVKNPCDSSSNGIHVDGIPAEAVNSAVSKASETHHHDEKQKQNEDSEKVGKKPTKLVPCPRCESMDTKFCYFNNYNVNQPRHYCRRCQRYWTAGGSLRNVPVGAGRRKTSPASELITG
O22967_______________KLFGKTIAFNTRTIKNEEETHP---PEQEATIAVRSSSSSDLTAEK------------RPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSKPPGRVVVG

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
895	16		83		0.994512
898			83	16	0.994512
899			83	16	0.994512
955		12		87	0.992554
966			87	12	0.992554
975		12		87	0.992554
976	12			87	0.992554
998	15		84		0.999986
1130	88		11		0.923564
1205			88	11	0.923564
1212			88	11	0.923564
1215	88	11			0.923564
1216	11			88	0.923564
1217			11	88	0.923564
1218		11		88	0.923564
1220	11			88	0.923564
1222	88		11		0.923564
1223		88	11		0.923564
1224	88			11	0.923564
1225		11	88		0.923564
1227	88	11			0.923564
1228	87		12		0.992554
1231	87		12		0.992554
1241	83	16			0.994512
1242	66	16		16	0.988813

SSRs (tot: 1)

Start position	End position	Sequence	Length
175	186	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain