SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25070

Length: 1627 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene25070 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative transducin / WD-40 repeat protein [Oryza sativa Japonica Group]	-	-	63%
FL-Next	sp=Ribosome biogenesis protein BOP1 homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	52%
Blast2go	ribosome biogenesis protein bop1 homolog	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	BOP1, N-terminal domain	IPR012953	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: A8ID74

Fln msg: Distance to subject end: 411 aas, your sequence is shorter than subject: 383 - 797

Fln protein: MKQKRKGHQVDDPKYSVQTPQEDDTPNESGPASEEVESSDEEGGNSSNIEDDIIYSSSEEDPVVSSDYEEDEDGEGDAEGVTAEQELEGDIDNALQNYMGTLNVLSNFHGENLKNAEGEDTSGDDDEEEEMPKRAEESDSPEDEDDERPKRAEESDFSEDEDEERPKRAEESDSSEDEVPSRNTVGDVPLRWYQDEQHIGYDIKGKKIKKQPKKDQLDSFLASTDDSSDWRKVYDEYNDEEVELTKDEIKFISRLRKGTIPHADVNPYEPYVDWFDWKDKGHPLSNAPEPKRRFIPSKWEAKKVVKLVRAIRKGWITFQKAEEKPRFYLMWGDDLKPSEKMANGLSYIPAPKPKLPGHEESYNPPPEYIPTQEEINSYQLMYE

Protein Length: 384

Fln nts: CCAGTAACCTAtACCTTGCAAGTGCTTTCAACTGAAGGTTGAGTGGCGATCTCGATATCTAGGAGGTTTAATATCGAGGAGATACTATGGAAATCGTTTTTATAATACTTTGTCTGTCGCCCGCGGCGGTAGATTGCGATTAAAAAGTAACCAGCGTCGTGACCTTGGCTGTCACTCTGTTGTTTTGGTTCCTTTCGAGTTAGACTACCCCTGACAATTGCTTTTACCTTTCAAGCTGCTCTCAGTATCTAATGGAGGTTTGATATTCGACGATACTTGATTTGTGCAAATACCTAGTATACATAACAAGATATTATACTCTGTTCCTCGCCCTAGATTGCGATTGAAAGCAAGCGAGACAGTCAGGGGTACGGTTGCTGCTGTTGAAGGCGCCTTGGGCTGTATAGTAACAACACTGCCACTGAAATCATTGCTGGGGCGTTGGTAAAGTTGCAGAAGCAGCAGGACGACTAACAGG_-_ATGAAGCAGAAGCGAAAGGGCCATCAAGTTGATGACCCAAAATATTCTGTCCAAACCCCCCAAGAGGATGACACACCTAACGAAAGCGGCCCTGCTTCGGAAGAAGTGGAGAGTAGTGACGAAGAAGGCGGCAATAGCAGCAACATCGAAGATGATATTATTTATTCTTCTTCCGAAGAAGACCCCGTTGTTAGTTCTGATTACGAAGAAGACGAAGACGGAGAAGGTGATGCAGAGGGTGTGACTGCAGAGCAAGAGTTGGAAGGGGACATCGACAATGCCCTCCAAAATTATATGGGAACCCTTAATGTTCTTTCCAATTTTCATGGAGAGAACCTTAAAAATGCCGAAGGTGAAGATACTTCTGGGGATGATGATGAGGAGGAGGAGATGCCTAAAAGAGCTGAAGAGTCTGATTCTCCGGAGGACGAGGATGATGAGAGGCCTAAAAGAGCTGAAGAATCTGATTTCTCGGAGGACGAGGATGAGGAGAGGCCTAAAAGAGCTGAAGAGTCTGATTCTTCGGAGGACGAGGTTCCTTCCAGAAACACTGTTGGAGATGTTCCCCTCCGTTGGTATCAAGACGAACAGCACATTGGCTATGATATTAAGGGTAAGAAGATCAAGAAGCAGCCTAAAAAGGACCAGCTAGATTCATTCCTCGCTAGTACAGATGATTCCAGTGACTGGCGTAAGGTATATGATGAATATAATGATGAAGAGGTTGAGCTAACAAAGGATGAAATCAAGTTTATTAGTAGATTACGTAAAGGCACAATACCTCATGCTGATGTCAATCCATATGAGCCTTATGTTGATTGGTTTGACTGGAAAGATAAGGGTCATCCCTTGTCTAATGCCCCAGAACCCAAGCGGAGATTTATCCCATCAAAATGGGAAGCTAAAAAGGTTGTGAAGCTTGTGAGAGCAATTCGGAAAGGATGGATAACGTTTCAGAAAGCTGAAGAAAAGCCTCGCTTCTATTTGATGTGGGGAGATGATCTCAAACCATCAGAAAAAATGGCAAATGGGCTGAGTTATATCCCAGCGCCAAAACCAAAGTTACCTGGGCATGAAGAATCATACAATCCTCCACCTGAGTATATTCCAACACAGGAGGAGATCAATTCATACCAGCTTATGTATGAG

Fln Alignment:

Contig25070___PSRNTVGDVPLRWYQDEQHIGYXXXXXXXXXXXXXXQLDSFLASTDDSSDWRKVYDEYNDEEVELTKDEIKFISRLRKGTIPHADVNPYEPYVDWF-DWKD-KGHPLSNAPEPKRRFIPSKWEAKKVVKLVRAIRKGWI--TFQKAEEK----PRFYLMWGDDLKPSE---KMANGLSYIPAPKPKLPGHEESYNPPPEYIPTQEEINSYQL
A8ID74_______________PNRNTVGNVPLVWYKDEEHIGYDIEGARITKAQRKDRLQQLLDRNDSKKALRTIYDPYNDEEVTLSKEELAMVMRIRAGQFPHLEVNPHETEHTWFTDPRDAEVMPIVDRPEPKSRFVPSKWEEQKIVKLVRAIRKGWIKKTPEQEEEERAAGPPAYLLWADDGLTDEAAAKAGSGLTYIPAPKLQLPGHADSYNPPAEYLPTEEEVAAWQM

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
542			37	62	1.0
546	62		37		1.0
548		62	37		1.0
550		37		62	1.0
557			33	66	1.0
562	33			66	1.0
563		33	66		1.0
564			33	66	1.0
565	33			66	1.0
630	88			11	0.923564
989	80	20			0.995493
991	80			20	0.995493
994	50			50	1.0
995			50	50	1.0
999		50	50		1.0
1001		50		50	1.0
1002	50	50			1.0
1003			50	50	1.0
1004		50		50	1.0
1006	50		50		1.0
1008			50	50	1.0
1011		50		50	1.0
1012	50		50		1.0
1014			50	50	1.0
1015	50		50		1.0
1017			50	50	1.0
1283	33			66	1.0
1433	37	62			1.0
1454	16	66		16	0.988813
1455	33	16		33	1.0
1456		16	83		0.994512
1457	50	50			1.0
1458	16	33	50		1.0
1461	60	40			1.0
1464		40	60		1.0
1469		40	60		1.0
1472		60	40		1.0
1474	40	60			1.0
1476	60			40	1.0
1478			60	40	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
760	771	CTC CTC CTC CTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain