SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25049

Length: 3459 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene25049
GGATGGTCACAATTGGCGGAAAAAAAAGATGGGAAAACTATTCGAGAAGCACATGAACGGTTGAAGGTTGGAAATGTGGATGCTTTGCATTGTTATTATGCACATGGGGAAGATAATCCAAACTTCCAACGCCGAATCTATTGGATGCTTGATGAGTCCTTTGAGCATATTGTTCTTGTGCACTACAGAGAAGTTACGGAGGGAAGATTCAGTTCCTGTTCACTAACTAACTTCTCAAAAGATGGTTCTTTAGCTGTTCAAACCCAACATTCCGCTTTGACCCAAATGCAGAACTCAAGTGATGGAACTGGAAGCAGAGAAATATATTCGTCATCTTGGATTCACAGTCCAGGAACACTGGAGGAAGTCAGTTCTAATCTGGTTGTGGGAAATGATGAGCTTGACTCGGGGGATGATATAAACAAGAATGAAGATTGCAGTAATCCCTTGACCAATGATGCTGTTTCTTTGACAAATCAGGAAATTGCGTGCCTTCAACAACTTAGAGATGAGCTGAATCTAGAAGTAGATGATTCTGGATACTCACAAAAGGACATCTCTTCTCCTTGGAATGCTTCAAGTATGGCAATGCTGCAATCTAACCTTTCAACTTTGGAAAATGGTTTCTCAAACCAAGAGATACTCGCATCTCCTCTACATGGAAGCAAATACCACGGGCAAGATCAACACAGAAGGGAAAATGTAAAGAATTTAAAGAACTTGAATATTGACGTTTTGCACCAAAATCCTGATGCATACTTTGGCCAGTGTTCTTTGCATCAGAAGCCAAGAGAACTACTAGAGACAGAAACCAACTCACCATCCTGGAAAGAGATGTGGGAGCTTTCTACAACTTCCAACAGGCAGAATATTAACTCTTCTTTATTTCCCAAGGGCCAAAGTAACATAAGTTTTCCAAACCCATGTAATGTCACTGATCCATGGAATGATGAAGAGTCAGTGGACAATGTGTTTCCCAAAGCAGAAAGAGATGTGCTACGTGTTTCTTCGGAGAAGATTGGAAATGGGATGGAAAACAATAAGGATCTGTTATTTTCTTCTGGGGATAATGGAACGATTCACAAAACATGCTTTCAAGGACAGCCACAAGAAAGAAAATACAATGAAATTGAAAGTTTTGAACACAAACAACTTTATCAAAGTGAAGGGTATCCAAGAGATGGTTCTGGCCATTCCTCATCTTCAACAACTATGCTCTTTTCTCAAGAATGTGAAGGACAGGATCCACGTCTGGTCACTACAGTCAATTTTCTAAAGGAGGGATTTGAGAAATTCAGGAAATCTGATAGTTTTGGATGGTTAGAAGACGAAGAAATATCAACAAATAATGTCAACCTCCAACCCGACTACTATGGAGTATTATTTGAGCAGCAGTGTAATATAGGAGGTCAGGAATTGGCAGAAGATTCCAGTGTGACACTGGCTCAAGTACAGAGATTTAGCATTCTTGAATTTTACCCTGACTGTGCCTACTCAAGTGAAGGATCAAAGGTCTTAGTAATTGGCAACTTCATAGGGAATCCATTGGAACATACATGGTGCTGTATGTTTGGTGATATTGAAGTTCCTGCAGAGATAATTCGGGAAGGTGTTCTTTCTTGTAAGGCCCCTCCTCATGTGCCTGGAAAATTACCATTCTGTGTAACATGCGGTAATCGAGAAGCTTGCAGTGAAATAAGAGACTTTGAATACCGTGTAAAGCCTCACAGTTATGCTAGTGAGAGTGTCCCAGAATCTATAGATGCAAACCAAGGCCATGAGGAACTTCTGTTGCAAGTTAGATTTGCTCGCATGCTTCTCTCTGAAATAAAACCAAGTTCATCATTAGATAATACTGTGAAAGAAGGTGTTGCAGAATTCAATGATGCTTTTTTTTGGTTGGAAGCAGTAAGTGACGATCATTGGGAACAAATTGAGTGTGCAGTTGGAGATGGCGGTGAGCCTCTTGCATATACAAAAGAATGGCTTCTTCAAACTTTCCTAAAGGAGAAACTATGTCAGTGGCTTAGGTATAAAAATAATGAAGGGGAAAAGGGTGCCTCAGTTCTTAACAAGCATGGGCAATGTGTCTTACACATAGCATCTGCACTAGGTTACGAATGGGCAATAACTCCAATACTAAATGCTGGTGTCGGGATTAACTTTCGAGATGCACATGGATGGACTGCCCTTCATTGGGCTGCATGTTATGGCAGGGAAAAAACTGTGGCGGCACTTATAGCTGCAGGTGCATCAGCAGGAGCAGTCACAGATCCTACCCCAAAATTTCCATCTGGGAGAACTGCAGCAGGCATTGCTGCAGCCAGTGGACATGGTGGGATTGCAGGTTACCTGGCAGAGGCATCACTAACTAGCCACCTATCTACGCTCACTCTTGGTGAGAATGAGATTTCAAAGGCATCTGCAGCAGTGGAGGCAGACAGAGCTGTGGAAAGTGTGTCAAATAGGAGTGGCATTTCAACAAACAGTAGGTACAACAGAGGATCAGCTTTCCTTGAAAGATTCTTTGGCAGCTGTTAGGAATTCTGCTCAGGCAGCAGCACGCATACAGGCTGCTTTCCGTGCTCACTCATTTAGAAAGCGGCAACAAAATTCTGAAGGTGTATGCAATGAATATGGTATGACTCAGGCAGATCTTCAGGGAATATCTACCATTCAAAGGGCATTGCACAAACATCGTGATCAGAAGTTAAATAAAGCAGCTACCTGTATTCAGTGTAAATTTCGTGGTTGGAAAGATCGCAAAGAATTTCTTACTTTGCGTCAGCATGTAGTGAAAATTCAAGCTCATTTCCGAGGACACCAAGTGAGGAAAAAATACAAAACGCTTCTGTGGACTGTTGGAGTTCTGGATAAAGCTATATTACGGTGGCGGAGAAAGGGTGTTGGGTTGCGTGGATTTAAGGCTGAGATTCCTGAAGGTATTGAACTGGATGATGAAAATGATGATGATTTTCTGAAGGTTTTCAGGAAGCAGAAGGTGAACTTGGCACTTGATGAAGCAGTTGGTCGTGTAGTGCACATGATTGACTCTCCAGATGCACGCCATCAATATCGACGTATGCTTGAAAGATATCAGCAAGTCAAGGATGAATACCGTGGGCAGATAACTGAATCATCCTCAAGTACTCCACTAGCAGATCTCAGTCATATTGAAGATGAATATATGAGTCTATTGGATTAACAATCTTATTTGAACCATTTTGGTAAAAATGTTGGTGAATGTATTATATTTTTCGTTGTTTTTAATTGCACAATTATTCAAAGGGGATCAAGTTTGTATGAGTCCCAGATAAAATTGTGTCAATTTGATGCATTTGAGCTTTGAATCCTACAATGGCACAAACTAGTCATGATAACTTGTCATCGCAGATTACTTGGGATTTGTTATGGAGTTGTAATATAGGGATATTCTGTAACCGGGCTTGATTAGTTTTA

Ace file of the UniGene sp_v2.0_unigene25049

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	calmodulin-binding transcription activator 4 [Arabidopsis thaliana] sp\|Q9FYG2.1\|CMTA4_ARATH RecName: Full=Calmodulin-binding transcription activator 4; AltName: Full=Ethylene-induced calmodulin-binding protein 4; Short=AtFIN21; Short=EICBP4; AltName: Full	-	-	36%
FL-Next	sp=Calmodulin-binding transcription activator 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	calmodulin-binding transcription activator 4-like	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Cell surface receptor IPT/TIG	IPR002909	-	-
Sma3	CG-1 DNA-binding domain	IPR005559	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9FYG2

Fln msg: Overlapping hits, possible frame ERROR between 37 and 10, and possible frame ERROR between 381 and 1408, query STOP codon too far from subject stop. Distance to subject end: 39 aas, putative chimeric sequence,

Fln protein: DGxxxxxxxxxxxIREAHERLKVGNVDALHCYYAHGEDNPNFQRRIYWMLDESFEHIVLVHYREVTEGRFSSCSLTNFSKDGSLAVQTQHSALTQMQNSSDGTGSREIYSSSWIHSPGTLEEVSSNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGQELAEDSSVTLAQVQRFSILEFYPDCAYSSEGSKVLVIGNFIGNPLEHTWCCMFGDIEVPAEIIREGVLSCKAPPHVPGKLPFCVTCGNREACSEIRDFEYRVKPHSYASESVPESIDANQGHEELLLQVRFARMLLSEIKPSSSLDNTVKEGVAEFNDAFFWLEAVSDDHWEQIECAVGDGGEPLAYTKEWLLQTFLKEKLCQWLRYKNNEGEKGASVLNKHGQCVLHIASALGYEWAITPILNAGVGINFRDAHGWTALHWAACYGREKTVAALIAAGASAGAVTDPTPKFPSGRTAAGIAAASGHGGIAGYLAEASLTSHLSTLTLGENEISKASAAVEADRAVESVSNRSGISTNSRYNRGSAFLERFFGSC*EFCSGSSTHTGCFPCSLI*KAATKF*RCMQ*IWYDSGRSSGNIYHSKGIAQTS*SEVK*SSYLYSV*ISWLERSQRISYFASACSENSSSFPRTPSEEKIQNASVDCWSSG*SYITVAEKGCWVAWI*G*DS*RY*TG**K***FSEGFQEAEGELGT**SSWSCSAHD*LSRCTPSISTYA*

Protein Length: 1031

Fln nts: GGATGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTCGAGAAGCACATGAACGGTTGAAGGTTGGAAATGTGGATGCTTTGCATTGTTATTATGCACATGGGGAAGATAATCCAAACTTCCAACGCCGAATCTATTGGATGCTTGATGAGTCCTTTGAGCATATTGTTCTTGTGCACTACAGAGAAGTTACGGAGGGAAGATTCAGTTCCTGTTCACTAACTAACTTCTCAAAAGATGGTTCTTTAGCTGTTCAAACCCAACATTCCGCTTTGACCCAAATGCAGAACTCAAGTGATGGAACTGGAAGCAGAGAAATATATTCGTCATCTTGGATTCACAGTCCAGGAACACTGGAGGAAGTCAGTTCTAATCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGGTCAGGAATTGGCAGAAGATTCCAGTGTGACACTGGCTCAAGTACAGAGATTTAGCATTCTTGAATTTTACCCTGACTGTGCCTACTCAAGTGAAGGATCAAAGGTCTTAGTAATTGGCAACTTCATAGGGAATCCATTGGAACATACATGGTGCTGTATGTTTGGTGATATTGAAGTTCCTGCAGAGATAATTCGGGAAGGTGTTCTTTCTTGTAAGGCCCCTCCTCATGTGCCTGGAAAATTACCATTCTGTGTAACATGCGGTAATCGAGAAGCTTGCAGTGAAATAAGAGACTTTGAATACCGTGTAAAGCCTCACAGTTATGCTAGTGAGAGTGTCCCAGAATCTATAGATGCAAACCAAGGCCATGAGGAACTTCTGTTGCAAGTTAGATTTGCTCGCATGCTTCTCTCTGAAATAAAACCAAGTTCATCATTAGATAATACTGTGAAAGAAGGTGTTGCAGAATTCAATGATGCTTTTTTTTGGTTGGAAGCAGTAAGTGACGATCATTGGGAACAAATTGAGTGTGCAGTTGGAGATGGCGGTGAGCCTCTTGCATATACAAAAGAATGGCTTCTTCAAACTTTCCTAAAGGAGAAACTATGTCAGTGGCTTAGGTATAAAAATAATGAAGGGGAAAAGGGTGCCTCAGTTCTTAACAAGCATGGGCAATGTGTCTTACACATAGCATCTGCACTAGGTTACGAATGGGCAATAACTCCAATACTAAATGCTGGTGTCGGGATTAACTTTCGAGATGCACATGGATGGACTGCCCTTCATTGGGCTGCATGTTATGGCAGGGAAAAAACTGTGGCGGCACTTATAGCTGCAGGTGCATCAGCAGGAGCAGTCACAGATCCTACCCCAAAATTTCCATCTGGGAGAACTGCAGCAGGCATTGCTGCAGCCAGTGGACATGGTGGGATTGCAGGTTACCTGGCAGAGGCATCACTAACTAGCCACCTATCTACGCTCACTCTTGGTGAGAATGAGATTTCAAAGGCATCTGCAGCAGTGGAGGCAGACAGAGCTGTGGAAAGTGTGTCAAATAGGAGTGGCATTTCAACAAACAGTAGGTACAACAGAGGATCAGCTTTCCTTGAAAGATTCTTTGGCAGCTGTTAGGAATTCTGCTCAGGCAGCAGCACGCATACAGGCTGCTTTCCGTGCTCACTCATTTAGAAAGCGGCAACAAAATTCTGAAGGTGTATGCAATGAATATGGTATGACTCAGGCAGATCTTCAGGGAATATCTACCATTCAAAGGGCATTGCACAAACATCGTGATCAGAAGTTAAATAAAGCAGCTACCTGTATTCAGTGTAAATTTCGTGGTTGGAAAGATCGCAAAGAATTTCTTACTTTGCGTCAGCATGTAGTGAAAATTCAAGCTCATTTCCGAGGACACCAAGTGAGGAAAAAATACAAAACGCTTCTGTGGACTGTTGGAGTTCTGGATAAAGCTATATTACGGTGGCGGAGAAAGGGTGTTGGGTTGCGTGGATTTAAGGCTGAGATTCCTGAAGGTATTGAACTGGATGATGAAAATGATGATGATTTTCTGAAGGTTTTCAGGAAGCAGAAGGTGAACTTGGCACTTGATGAAGCAGTTGGTCGTGTAGTGCACATGATTGACTCTCCAGATGCACGCCATCAATATCGACGTATGCTTGA___AAGATATCAGCAAGTCAAGGATGAATACCGTGGGCAGATAACTGAATCATCCTCAAGTACTCCACTAGCAGATCTCAGTCATATTGAAGATGAATATATGAGTCTATTGGATTAACAATCTTATTTGAACCATTTTGGTAAAAATGTTGGTGAATGTATTATATTTTTCGTTGTTTTTAATTGCACAATTATTCAAAGGGGATCAAGTTTGTATGAGTCCCAGATAAAATTGTGTCAATTTGATGCATTTGAGCTTTGAATCCTACAATGGCACAAACTAGTCATGATAACTTGTCATCGCAGATTACTTGGGATTTGTTATGGAGTTGTAATATAGGGATATTCTGTAACCGGGCTTGATTAGTTTTA

Fln Alignment:

Contig25049___DGHxxxxxxxxxTIREAHERLKVGNVDALHCYYAHGEDNPNFQRRIYWMLDESFEHIVLVHYREVT---EGRFSSCSLTNFSKDGSLAVQTQHSALTQMQNSSDGTGSREIYSSSWIHSPGTLEEVSSNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGQELAEDSSVTLAQVQRFSILEFYPDCAYSSEGSKVLVIGNFIGNPLEHTWCCMFGDIEVPAEIIREGVLSCKAPPHVPGKLPFCVTCGNREACSEIRDFEYRVKPHSYASE-SVPESIDANQGHEELLLQVRFARMLLSEIKPSSSLDNTVKEGVAEFNDAFFWLEAVSDDHWEQIECAVGDGGEPLAYTKEWLLQTFLKEKLCQWLRYKNNEGEKGASVLNKHGQCVLHIASALGYEWAITPILNAGVGINFRDAHGWTALHWAACYGREKTVXXXXXXXXXXXXVTDPTPKFPXXXXXXXXXXXXXXXXXXXYLAEAXXXXXXXXXXXGENEISKASAAVEADRAVESVSNRS
Q9FYG2_______________DGHxxxxxxxxxAIAEAHERLKVGNAEALNCYYAHGEQDPTFRRRIYWMLDPEYEHIVLVHYRDVSEREEGQQTGGQVYQFAP----ILSTQNVSYNQYIGDSS-----DIYQQS-STSPG-VAEVNSNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGLPFEQEMRVTGAHNQKFTIQDISPDWGYANETTKVIIIGSFLCDPTESTWSCMFGNAQVPFEIIKEGVIRCEAPQCGPGKVNLCITSGDGLLCSEIREFEYREKPDTCCPKCSEPQTSDMSTSPNELILLVRFVQTLLSD--RSSERKSNLESG----NDKLLTKLKADDDQWRHVIGTIIDGSASSTSTVDWLLQELLKDKLDTWLSSRSCDEDYITCSLSKQEQGIIHMVAGLGFEWAFYPILAHGVNVDFRDIKGWSALHWAAQFGSEKMVAALIASGASAGAVTDPSRQDPNGKTAASIAASNGHKGLAGYLSEVALTNHLSSLTLEETENSKDTAQVQTEKTLNSISEQS

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1894		33		66	0.997452
2203	12	87			0.992554
2207	87		12		0.992554
2208			12	87	0.992554
2211	11			88	0.923564
2217	88			11	0.923564
2247	14		85		0.993533
2251			85	14	0.993533
2273	83		16		0.994512
2484		75		25	0.996473
2500		80		20	0.995493
2501	80		20		0.995493
2503	80		20		0.995493
2685		10	90		0.90298
2686	10	90			0.90298
2692	70		30		1.0
2734		11		88	0.923564
2853	20	80			0.995493
2856			16	83	0.994512
2910	14		71	14	0.984337
2911		16	83		0.994512
2912	16		83		0.994512
2968	88		11		0.923564
3426			10	90	0.90298
3438	14		85		0.993533
3439		12		87	0.992554
3441	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain