SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25036

Length: 859 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25036

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosome associated membrane protein RAMP4 [Arabidopsis thaliana] ref\|NP_564279.1\| Ribosome associated membrane protein RAMP4 [Arabidopsis thaliana] ref\|XP_002890722.1\| hypothetical protein ARALYDRAFT_472929 [Arabidopsis lyrata subsp. lyrata] ref\|XP_00289	-	-	2.0e-08	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	membrane protein	-	-	1.03872e-15	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Endoplasmic reticulum, stress-associated Ramp4	IPR010580	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
156	25			75	0.996473
158			25	75	0.996473
160			25	75	0.996473
524		66	33		1.0
594			97	2	0.969538
710	3	32		64	1.0
712	88		11		0.999937
714	17			82	1.0
715	17	82			1.0
716	11	5		82	0.999919
717	12		87		0.999964
718	12			87	0.999964
740		10		90	0.90298
790		16		83	0.994512
808		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain