SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene25025

Length: 1013 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene25025

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C2 domain containing protein	-	-	2.0e-11	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	protein	-	-	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	0.0	-
Sma3	C2 membrane targeting protein	IPR018029	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRT4

Fln msg: your sequence is longer than subject: 235 - 194

Fln protein: MNHGRHEILEPKKRELEVMIISAEDLKNVKRMRKMKCYAVAYMDPDHKASTRIDQDGVINPNWNEKLLVTTDDELLSNVLAAITVEIYSYSHIRDKLVGTARILISELLKGGDHANPSDNPIKCIAVQVRRPSGRPQGILNIWVPPTSRFLLHRTLSFSKRDAADVTPLEPVAQNGGAAKENEKGKEGEEAHPHSSPEWSSSSDASPPRSPPHPASGIGPQENRVSFPPTKQDE*

Protein Length: 236

Fln nts: GAGGTTGCGTTCAGTCTTCATCCGTTTCTTTGTGGTTACTGTAAGGTACTTCGAGCACACACG_-_ATGAACCACGGAAGGCATGAAATTTTGGAGCCGAAGAAGCGAGAACTAGAGGTGATGATCATTTCGGCTGAAGACCTGAAAAATGTGAAGAGAATGCGGAAGATGAAATGTTACGCAGTGGCATACATGGACCCTGACCACAAGGCCTCCACCCGCATCGACCAGGACGGGGTAATAAACCCCAACTGGAACGAGAAGCTGCTCGTCACAACAGACGACGAGCTCCTCTCCAATGTATTGGCGGCCATCACGGTGGAGATTTACAGCTACAGTCATATCAGGGACAAGCTCGTGGGCACCGCCAGGATCCTCATTTCTGAGCTTCTCAAGGGAGGAGACCACGCGAACCCCTCCGACAACCCCATTAAGTGCATCGCCGTTCAGGTGAGGAGACCCTCCGGTCGCCCTCAGGGTATTCTCAACATCTGGGTTCCTCCCACTAGCAGATTCCTTTTGCACAGGACTCTCTCTTTCAGCAAGAGGGATGCGGCCGACGTTACTCCTCTGGAACCGGTTGCCCAAAATGGCGGCGCCGCAAAAGAAAACGAGAAAGGAAAAGAAGGCGAGGAAGCACATCCACACAGTAGTCCCGAATGGTCCAGTTCCAGTGATGCTTCACCCCCTCGTTCCCCTCCTCACCCTGCTTCTGGTATTGGTCCGCAGGAGAATAGAGTTTCTTTTCCCCCTACCAAACAAGATGAATGA___GATGAATGATGTTGACACTTTGTCTCCTATTGCTATATTTCTGTTCTGCATTTTGTTATATTGAACTTTTTCTTTTATTATCTGTATACAATAACTTTCAGGCCTCATCGCCATCTTGTTTCAGAGTTGAGTGTTATTGAAGTTTTTCTTTTATTATCTGTATACAATAACTTTCAGGCCTCATCGCCATCTTGTTTCAGAGTTGAGTGTTTCACTGAATAATAACTAAATGCGTGTTTAAACCC

Fln Alignment:

Contig25025___MKCYAVAYMDPDHKASTRIDQDGVINPNWNEKLLVTTDDELLSNVLAAITVEIYSYSHIRDKLVGTARILISELLKGGDHANPSDNPIKCIAVQVRRPSGRPQGILNIWVPPTSRFLLHRT-LSFSKRDAADVTPLEPVAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGPQENRVSFPPTKQDE
A9NRT4_______________MRCYAVAYIDPEQKASTRIDQDGGINPTWNEKLVLAADDELLSNVLAAITVEIYSYSHIRDKLVGTARILISDLLKGGDPANPSDNPIQCIAVQVRRPSSRPQGILNVWVPPTGRFLLHRTSLSFSRKD-AEVTPLEQGAN------NGGAPEGKEEEEVHLHSSPEWSSASDVSSPRSTPASALRPQENRVSVTPTKQDE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
689			90	10	0.90298
748		66	33		0.997452
761	75	25			0.996473
762		25		75	0.996473
763	25		75		0.996473
766		25		75	0.996473
767	25		75		0.996473
775		66		33	0.997452
834		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain