SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24946

Length: 1338 nt

Origin of reads: Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene24946 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha-2/alpha-4 chain n=384 Tax=Eukaryota RepID=TBA2_ARATH	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	alpha tubulin 1	-	-	93%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQU1

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 376 - 450

Fln protein: MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLLLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVRAVCMISNSTSVAEVFSRIDHKFDLM

Protein Length: 377

Fln nts: ATGGGGAGTGCAATTCGGCCTTTCGATTTAGCTTTCTATTCCTTCCTGCTCCGCTTTCGTGCAGACGTCTTTGCATACGTCTTCACGAAGCTTTCTCGTTTCTGCGACATTTTTCCTCGGCTGCTTGATTTTTTTGTGCGCTTAACCGGGATTGTTTCCATTCTTTTGAGGGTTTTTTTCGAGGTTTGAAGGGTTTCAACCAGCGACA_-_ATGAGGGAGTGCATTTCGATCCACATTGGCCAGGCCGGTATTCAGGTCGGCAATGCCTGTTGGGAGCTTTACTGTCTCGAGCACGGCATCCAGCCTGATGGACAAATGCCGAGTGACAAGACCGTTGGCGGTGGAGATGATGCATTCAACACATTTTTCAGTGAGACAGGTGCCGGTAAGCATGTTCCTCGTGCCGTGTTTCTGGATCTGGAGCCAACTGTCATTGATGAAGTTCGAACCGGCACATATCGGCAGCTTTTGCTGATCAGTGGCAAAGAAGATGCCGCCAACAACTTTGCTCGTGGCCATTATACCATTGGTAAGGAAATTGTGGATCTGTGCTTGGATCGAATCCGGAAGTTGGCAGACAACTGTACAGGCCTGCAAGGTTTCCTGGTCTTCCACGCTGTGGGAGGCGGTACCGGATCTGGTCTGGGGTCCCTTCTGTTGGAGAGGCTCTCTGTCGATTATGGAAAAAAATCGAAGTTGGGTTTCACTGTGTATCCATCTCCACAGGTCTCTACATCTGTAGTCGAGCCCTACAACAGCGTGCTGTCAACACACTCGCTGCTAGAGCATACAGATGTGGCCGTGCTGTTGGATAATGAGGCCATTTATGACATTTGTCGCCGTTCCCTGGACATCGAGCGTCCCACATACACTAACCTTAATAGACTTGTATCTCAGGTCATATCTTCCCTGACTGCCTCTCTGCGTTTTGATGGTGCTCTGAACGTTGATGTGACTGAGTTCCAAACAAACTTGGTGCCGTATCCTCGTATTCATTTCATGCTTTCCTCGTATGCTCCTGTGATCTCTGCTGAGAAGGCCTACCACGAGCAGCTGTCAGTAGCTGAGATCACCAACAGTGCCTTCGAGCCATCGTCCATGATGGCTAAATGTGATCCCTGTCTCATGTACCGAGGGGATGTTGTGCCCAAGGACGTGAACGCGGCAGTAGCCACCATTAAGACCAAGAGGACCATTCAGTTCGTGGATTGGTGTCCCACCGGGTTCAAGTGCGGTATCAATTATCAGCCTCCCACTGTGAGGGCCGTCTGTATGATTTCCAACTCGACCAGTGTAGCAGAGGTCTTCTCTCGTATTGATCATAAGTTCGATCTCATGTA

Fln Alignment:

Contig24946___MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLL----LISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDP--------CLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTV----------RAVCMISNSTSVAEVFSRIDHKFDLM
C0PQU1_______________MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain