SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24908

Length: 1618 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24908

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Atp8 n=8 Tax=Pinaceae RepID=B9VLG3_9CONI	-	-	88%
FL-Next	sp=Putative ATP synthase protein YMF19; berteroana). Mitochondrion.	-	-	71%
Blast2go	atp8	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F0 complex, subunit 8, mitochondrial, plant	IPR003319	-	0.0	-
Sma3	ATP synthase YMF19, uncharacterised, C-terminal	IPR009455	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P08746

Fln msg:

Fln protein: MMPQLDKFTYFTQFFWLCLIFFTFYISLCRDGVPRISRILKLRNQLVPHQQRGKPRNDPNSLEEILGRGFSTGVSYMYSSLFEVSQWCNAADLLGRNKKITYISCFGEISGSRRMERNILYLIPKYSYSTYPNPLSGWRMTCWDNIMLIHVLHGQVNIVC*

Protein Length: 162

Fln nts: ATCTTTCCCACCCAACCTGTTGCTTCTTTCTTCTAAAGGCTGTCCTCTCTCGGCTGGATGTTGGTCCAGCCTACTACGAGGATCCCGTACATCGTATTTATCCGGTCCCGTGGTTACTATGCCGCCGCGTTTCTTTTCCGGTCCTTTTGCAGAATTTGTGCACTATATATTGTAGTTGCCTACACACACAAATGAAAATTCTGGGATATCCTTGCCCCCCGGAGGGACAAGCGGCTTCGCACCTTTAGTGTTTCGACTCTCCGTTCAGTGGATGAGATGGCTGCGCTCCAGCTCACTAAATAATGGGACGGCAGTGGTCCGCCGGCAAGCTCGTTCTGATCCTGCCTGGACGCAGTACATTGGAATCCTGATGCACCACCACGAACGCTACCGCGGCGGCGTCCGCCTGCGGTAAGGCACCACCCTGTTGTGCCAGCAGCCAACCCCGGCGTGTCAGCTCAGTTATCCTCATCAAGCCACTTACTGTCTGTCTAGCTAGCTCCCCAATCTTCCCTTCTCAGATCGATGAATAAGGACCGGCAGGGGCTCGACTGCTAAGGACCCTTTAGGGGGCTCGACTGATAAGGATGCGTAAGCATGCTCGACTGGCCGCCATCACCTTTAGGTGCTCGACCATAAGAATGCGTAAGCATGCTCGACTGTTAACCCCCCCACCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATAAGGCCGCCATCGAGAGGATGCGCAAGCAGGCTCGACCACCGCCTTTTAGTTACTTATTTGAGAGGCAATAAGTAAATTGAAACTTGAGTTGCTCGACCAACGGGAGAGGAAGGCAGGGCTCGACCGTAAGGGAGAGGATCTTTTCATAACGTGAAAACGCCTGGCCCTGGCAGCAAGCATAATATCGTATACATCATATCTCGATACAATCTCCCATGCTTTCCGTTGGTAAACGAATAACCGACCACCCGAAGCCCTATATCTTATTTATCCCTATACCTTGACTACTCGTACGAGAGTCTATTTCTGGATAGATATAATATAGGAAAGGGAATAAATAGAACCAGAGAA_-_ATGATGCCCCAACTGGATAAATTCACTTATTTCACACAATTCTTCTGGTTATGCCTGATCTTCTTTACTTTTTATATTTCCCTATGCCGTGATGGAGTACCTAGGATCAGCAGAATTCTCAAACTACGGAACCAACTGGTTCCACACCAACAAAGGGGGAAGCCCCGCAACGACCCCAACAGTTTGGAAGAGATTTTGGGAAGAGGTTTTAGCACCGGTGTATCCTATATGTACTCTAGTTTATTCGAAGTATCCCAGTGGTGTAACGCCGCCGACTTACTGGGGAGGAATAAGAAAATCACTTATATATCCTGTTTCGGAGAAATAAGTGGCTCACGGAGAATGGAGAGAAACATCCTATATTTGATTCCGAAGTATTCATATAGCACTTATCCCAATCCTCTATCTGGATGGAGGATGACTTGTTGGGATAACATAATGCTAATCCATGTTTTACACGGCCAAGTGAACATCGTTTGTTAA___GTCGTTAAGTTTGGAAGAGCCAGACCGTTTCTGTCTTTATTTGTTCGATCGATAAGGGCGGGCGAAGCGT

Fln Alignment:

Contig24908___MPQLDKFTYFTQFFWLCLIFFTFYISLCRDG--VPRISRILKLRNQLVPHQQRGKPRNDPNSLEEILGRGFSTGVSYMYSSLFEVSQWCNAADLLGRNKKITYISCFGEISGSRRMERNILYLIPKYSYSTYPNPLSGWRMTCWDNIMLIHVLHGQVNIV
P08746_______________MPQLDKFTYFTQFFWSCLFLFTFYIPICNDGDGVLGISRILKLRNQLLSHRGKNILRKDPNSLEELLRKGFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISSSRGMERNIFYLISKSSYSTSSN--LGWGVTCRNDIMLIHVPHGQGSIV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1451	87		12		0.992554
1576	20	80			0.995493
1578			20	80	0.995493
1579			25	75	0.996473
1592		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain