SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24895

Length: 708 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24895

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipase-like protein n=3 Tax=Oryza sativa RepID=Q6ZLH2_ORYSJ	-	-	2.0e-15	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	uncharacterized protein	-	-	4.31137e-17	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.31137e-17	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF620	IPR006873	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
148			20	80	0.995493
151	80		20		0.995493
152		80		20	0.995493
153	80		20		0.995493
154	20		80		0.995493
155		20	80		0.995493
451	81		18		0.999994
526			85	14	0.993533
528		14		85	0.993533
529			14	85	0.993533
530		14		85	0.993533
554	12	87			0.992554
556			12	87	0.992554
575	10	90			0.90298
707	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain