SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24861

Length: 1847 nt

Origin of reads: Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24861

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 1-alpha n=193 Tax=Eukaryota RepID=EF1A_ARATH	-	-	86%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	elongation factor 1-	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	92%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	92%
Blast2go	binding	GO:0005488	Molecular Function	92%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWR1

Fln msg: Overlapping hits, possible frame ERROR between 1458 and 1446,

Fln protein: MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKQAYSHPKNHRWAQNESCQGDNMIERSTNLDWYKGPTLLEALDQVSEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGTIVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEIMTKVDRRSGKELEKEPKFCRVSSIGFGKIxxxxxxVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSGAKVTKAAAKKK*

Protein Length: 442

Fln nts: GTATTTTTGTATGAACCGTCGGATTCGAGATCGGACGGCGATCCGAAACTGCAAGCGTCGGCCGTCGGATGCAGCATCGGACGGCAAAGAAGGAACCCTAAAACGCATTGCAACGTGCTTGGTGGGTGGAGGTTCTATGACCAGTATATGTTGATAACAAGGGAGGGGAAGTAGTCCTCTTCATCTTGTGCGAGTCTCTCTGCTCTCTACGCCGCTGCGAAGCTGTTCTGTGGTGCTTCTGATTCTCCAGACTCAGGCAGCCGTGTTTGTAAGAGAATTTAGTTCATC_-_ATGGGAAAGGAGAAAACCCATATCAACATTGTGGTTATTGGCCATGTCGACTCCGGCAAGTCAACAACCACTGGGCATTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAACGTGAACGTGGTATCACAATTGATATTGCACTGTGGAAGTTTGAGACAACTAAATACTACTGCACTGTGATTGATGCCCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGAACATCTCAGGCTGACTGTGCAGTTTTGATCATCGACTCCACCACTGGAGGTTTTGAAGCTGGTATTTCCAAGGACGGTCAGACGAGAGAACATGCCCTATTGGCGTTCACCTTGGGAGTGAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACTACTCCCAAGTACTCTAAGGCTCGTTATGATGAAATTGTTAAGCAAGCATATTCTCACCCGAAAAACCACAGATGGGCACAAAACGAATCTTGTCAGGGTGACAATATGATTGAGCGTTCTACCAACCTTGATTGGTACAAGGGTCCAACACTCTTGGAAGCTCTGGACCAGGTTTCAGAGCCAAAGCGTCCTTCAGACAAGCCTCTGAGGTTGCCTCTTCAGGATGTTTACAAGATTGGTGGTATTGGGACTGTGCCTGTTGGTCGTGTGGAAACTGGAGTCATAAAACCAGGTACGATTGTTACCTTTGGTCCCACTGGTCTGACAACTGAAGTTAAGTCTGTTGAAATGCATCATGAAGCTCTTCAGGAGGCATTGCCTGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTGGCATCTGATTCCAAGAATGATCCAGCAAAGGAAGCTGCCAACTTTACCGCACAGGTTATTATTATGAATCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTGTTGGATTGTCACACTTGCCACATTGCCGTCAAGTTTGCTGAGATCATGACCAAGGTTGACAGGCGTTCTGGCAAGGAGCTGGAGAAGGAGCCCAAGTTTTGCAGAGTATCCTCCATTGGATTTGGTAAGATCxxxxxxxxxxxxxxxxxxGTTGTCGAAACTTTTGCAGAGTATCCTCCATTGGGTCGTTTTGCAGTCAGGGACATGCGTCAGACGGTTGCTGTAGGAGTCATCAAAGCTGTTGAAAAGAAGGAACCTAGTGGTGCAAAGGTTACCAAGGCAGCAGCCAAAAAGAAGTGA___ATGTTCCAGCAAAGTGATTGGGAATGGAGGATTGCGTGCTGCATTTCGTGTGCTTCCATGCTTATGCTTCACTATTTTCCCGATAGTATGTTAGTAGAGTTAGTTTTCCAAATGCAGAATTGGGTTCTTGATCGGCGGTGGCATAGGTTACATTATTTTCGAGTAAATACTTTTTAATGGTTACATTAGGCTAAAGTTGATTTAAGATTTCGTAGTAGTGCAGACAAACTCATGATT

Fln Alignment:

Contig24861___MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKQAYSHPKNHRWAQNE-------SCQGDNMIERSTNLDWYKGPTLLEALDQVSEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGTIVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEIMTKVDRRSGKELEKEPKFCRVSSIGFGKIIxxxxMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSG
A9NWR1_______________MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETNKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKRVGYNPDKIPFVPISGFEGDNMIERSNNLDWYKGPTLLEALDQVSEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGTIVTFGPTGLTTEVKSVEMHHEALQEAYPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFSEIMTKVDRRSGKELEKEPKFLKNGDAGFVKMIxxxxMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1035	33		66		0.997452
1036	66			33	0.997452
1579			66	33	0.997452
1826		25	75		0.996473
1828	66			33	0.997452
1830		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain