SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24764

Length: 699 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene24764 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TMA7 multi-domain protein	-	-	8.0e-15	67%
FL-Next	tr=Putative uncharacterized protein; Volvox carteri (Green alga).	-	-	0.0	23%
Blast2go	protein	-	-	3.34706e-10	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation machinery associated TMA7	IPR015157	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
330	12	87			0.992554
339	12		87		0.992554
377			87	12	0.992554

SSRs (tot: 3)

Start position	End position	Sequence	Length
22	110	TAAGCAGTGGGTATCAACGCAGAG TAAGCAGTGGGTATCAACGCAGAG TAAGCAGTGGGTATCAACGCAGAG TAAGCAGTGGGTATCAA	89
174	289	AAGACAAGTAGGTAATACAAACGACAGAGT AAGACAAGTAGGTAATACAAACGACAGAGT AAGACAAGTAGGTAATACAAACGACAGAGT AAGACAAGTAGGTAATACAAACGACA	116
264	421	AAGACAAGTAGGTAATACAAACGACAAGAAGTA AAGACAAGTAGGTAATACAAACGACAAGAAGTA AAGACAAGTAGGTAATACAAACGACAAGAAGTA AAGACAAGTAGGTAATACAAACGACAAGAAGTA AAGACAAGTAGGTAATACAAACGACA	158

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain