SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24729

Length: 1245 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene24729 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH	-	-	98%
FL-Next	sp=Polyubiquitin 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	98%
Blast2go	polyubiquitin 3	-	-	98%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	0.0	98%
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	98%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3E7T8

Fln msg:

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGLAVTLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL*

Protein Length: 307

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACAGTGATTTCAATCGAGCGTTGGAGATTTTTTCATAAGACCGGGGAAGCGTTTTCTCAACAAGTTTATTTCAGGTGTTTTGTTCGCAATTTTTAGATTTCAAA_-_ATGCAGATATTTGTGAAGACATTGACCGGAAAAACCATAACCCTCGAGGTCGAGAGCTCAGATACCATAGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAGAGGCTCATTTTCGCTGGAAAACAGCTTGAGGATGGCCGAACACTCGCAGATTACAACATCCAGAAAGAATCGACTCTTCACCTTGTTCTCCGTCTGAGAGGAGGGATGCAGATCTTTGTCAAAACTCTGACTGGCTTGGCTGTCACTCTGGAAGTCGAAAGCTCTGATACAATTGACAATGTCAAGGCCAAAATTCAAGACAAGGAAGGCATTCCACCGGATCAGCAGAGGCTGATTTTTGCCGGAAAACAGCTTGAGGACGGACGCACTCTTGCCGATTACAACATCCAGAAGGAATCTACTCTTCACCTTGTTCTCCGTCTCAGAGGAGGGATGCAGATTTTTGTCAAAACCCTGACCGGAAAAACAATCACGCTTGAAGTTGAGAGCTCAGACACTATTGACAACGTCAAGGCCAAAATTCAAGATAAGGAGGGGATTCCTCCGGATCAGCAGAGATTGATCTTTGCAGGGAAGCAACTTGAAGATGGGAGGACTCTAGCCGACTACAACATTCAGAAGGAATCTACGCTGCATCTTGTGCTTCGCCTCCGTGGTGGTATGCAGATATTTGTGAAAACTTTGACAGGCAAGACCATCACACTAGAGGTTGAGAGCTCTGATACGATTGATAATGTGAAGGCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCAGAGGCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCCGAACCCTCGCCGATTATAACATTCAAAAGGAATCCACCCTCCACCTTGTCTTGCGTCTGCGTGGTGGCCTTTGA___GATTGTGGGGAATGAATTTCACTTGACGTTAAAGCCTTGCCGTGTAAAGGCTTCGTGTTTTATCAGTTTTAGATGTTGACTTCGTATTCTCTGTTGTTAGACATTCCTTTACAAAGATTAGCGGCTGTATCGGTTGTCAATGTTATGTGAATTATGCACTTCTACTTTTGTGATTGAAATAAAACCGTATGTTCAAATT

Fln Alignment:

Contig24729___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGLAVTLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Q3E7T8_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
625		12		87	0.992554
626	12			87	0.992554
627			85	14	0.993533
685	75			25	0.996473
686			75	25	0.996473
1159	89	10			0.999919
1165	11			88	0.999937
1169		11	88		0.999937
1227		25		75	1.0
1228		25	75		1.0
1229	75	25			1.0
1230		23	76		1.0
1232	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain