SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24719

Length: 1044 nt

Origin of reads: Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24719

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	gag-pol polyprotein	-	-	57%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 152 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 334 - 407

Fln protein: MGENTTSNEGWDVYLASSSTHVDHEAWLIDSGASFHFTPHREWFYEYEKYDGGDVFLGDDRKARIVGHGKLKLKLQGGRVGTLPSVLHIPALARNLIFVSKLDDAGVKTVFEKDTCKMVRRALILMRGVRIGTLYKLQGSTIVDGCNSSMVPENGAENLVVSGEKTML*HQRLGHIGEKGLRILHGKSMVEGMNNSSLDFDFCENCVYGKQNRVSFPSSGKRAKQILELVHSDVFGPMKAPSLGKFVYYVSFIDDFSRNTWIYFLRKKSEVFDMFK*FKALVENQT*KKIMVLRIYNGGEFCKKELKSSLRSVVLHNRRLLHTHFSEMELQKE*

Protein Length: 335

Fln nts: _-_ATGGGGGAAAATACCACCTCAAATGAAGGTTGGGATGTGTACTTGGCTTCTTCAAGTACACATGTAGATCATGAGGCATGGTTGATTGATTCAGGTGCGTCCTTTCACTTCACTCCCCACAGAGAGTGGTTCTATGAGTATGAGAAATACGATGGTGGTGATGTCTTCTTAGGGGATGATAGGAAGGCTAGAATTGTTGGTCATGGAAAACTAAAGTTGAAGTTGCAAGGTGGAAGGGTTGGAACACTTCCGAGTGTTTTGCATATTCCTGCATTGGCTAGAAATCTGATTTTTGTAAGCAAGTTGGATGATGCAGGTGTAAAGACAGTGTTCGAGAAAGATACCTGCAAGATGGTTCGAAGAGCACTGATATTGATGCGGGGAGTTCGGATTGGAACTCTGTACAAGCTGCAAGGTAGCACTATTGTTGATGGGTGCAATAGTTCTATGGTTCCAGAAAATGGAGCAGAAAATCTAGTGGTCTCTGGAGAGAAGACCATGTTGTAGCATCAAAGGCTTGGACATATTGGAGAGAAGGGCCTTCGAATACTTCATGGTAAAAGTATGGTAGAAGGTATGAATAATAGCTCTCTGGATTTTGATTTCTGTGAAAATTGTGTATATGGGAAGCAGAATCGGGTGAGTTTCCCCTCTAGTGGTAAGAGGGCGAAACAGATATTAGAGCTTGTGCATAGTGATGTGTTTGGACCTATGAAGGCTCCATCACTGGGTAAGTTTGTGTATTATGTATCATTTATAGATGACTTCTCAAGGAATACATGGATATATTTCCTCAGGAAGAAATCTGAAGTCTTTGACATGTTTAAATAATTTAAGGCTTTGGTGGAAAACCAAACATAGAAGAAGATAATGGTGTTGAGGATATATAATGGTGGAGAGTTTTGCAAGAAGGAATTGAAGAGTTCTTTAAGAAGTGTGGTATTGCACAATAGAAGACTACTCCATACACACTTCAGCGAAATGGAGTTGCAGAAAGAATGAACAGGACGTTGATGGAAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig24719___IPALARNLIFVSKLDDAGVKTVFEKDTCKMVRRALILMRGVRIGTLYKLQGSTIVDGCNSSMVPENGAENLVVS--GEKTML*HQRLGHIGEKGLRILHGKSMVEGMNNSSLDFDFCENCVYGKQNRVSFPSSGK--RAKQILELVHSDVFGPMKAPSLGKFVYYVSFIDDFSRNTWIYFLRKKSEVFDMFK*FKALVENQT*KKIMVLRIYNGGEFCKKE
B8LKX7_______________VPNLKSNLLSVNQIANQGYKVEFYKDKCLIKD----------INSNYKVVASGYVENGLYKFGRFTSNEKALVAEVDNVSRLWHERMGHLNYKSLSLMKRFEMVYGLPKISQSQGVCEGCMSGKQHMEKF-IKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
719		66		33	0.997452
737		33		66	0.997452
739	33		66		0.997452
744		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain