SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24569

Length: 380 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene24569
CGTCGTGACCTTGGCTGTCACTCAACTTCATTGTTGAGCAACTTTGAACACACGGCGAATAGAAGCAGAAAGAATTGAGAGATGGCCCGCACGAAGCAGACAGCCCGGAAATCTACCGGCGGGAAGGCCCCGCGGAAGCAGCTAGCGACGAAGGCTGCTCGGAAGTCTGCCCCGGCGACTGGAGGAGTGAAGAAGCCTCACAGATTCAGGCCCGGCACCGTTGCCCTCCGTGAGATCCGAAAGTACCAGAAGAGCACCGAGCTGTTGATAAGGAAGCTCCCCTTCCAGCGTCTGGTGAGGGAGATTGCCCAGGATTTCAAGACCGATCTGAGGTTTCAATCCTCTGCTGTGGCTGCGCTCCAAGAGGCGGCGGAGGCGTA

Ace file of the UniGene sp_v2.0_unigene24569 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B	-	-	2.99878e-43	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	histone h3	-	-	0.0	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	99%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	99%

Source	InterPros	Term	Type	Identity
Sma3	Histone H3	IPR000164	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAJ9

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 99 - 136

Fln protein: MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQVAAEA

Protein Length: 100

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTCATTGTTGAGCAACTTTGAACACACGGCGAATAGAAGCAGAAAGAATTGAGAG_-_ATGGCCCGCACGAAGCAGACAGCCCGGAAATCTACCGGCGGGAAGGCCCCGCGGAAGCAGCTAGCGACGAAGGCTGCTCGGAAGTCTGCCCCGGCGACTGGAGGAGTGAAGAAGCCTCACAGATTCAGGCCCGGCACCGTTGCCCTCCGTGAGATCCGAAAGTACCAGAAGAGCACCGAGCTGTTGATAAGGAAGCTCCCCTTCCAGCGTCTGGTGAGGGAGATTGCCCAGGATTTCAAGACCGATCTGAGGTTTCAATCCTCTGCTGTGGCTGCGCTCCAAGtGGCGGCGGAGGCGTA

Fln Alignment:

Contig24569___MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF
D5AAJ9_______________MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
350	20	80			0.999996
351	80	20			0.999996

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain