SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24425

Length: 456 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24425

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metallothionein-like protein EMB30 n=6 Tax=Picea RepID=MT3_PICGL	-	-	3.0e-27	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	mt3_picgl ame: full=metallothionein-like protein emb30	-	-	8.73128e-37	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Metallothionein, family 15, plant	IPR000347	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
178		9		90	0.999872
196	21		78		1.0
203	88		11		0.923564
214		60		40	1.0
234	66		33		0.997452
252		75	25		0.996473
253		75		25	0.996473
257	25		75		0.996473
284		33	66		0.997452
294		66		33	0.997452
342		16		73	1.0
345	16		83		1.0
350	16		83		1.0
353		12		87	1.0
356		14		82	1.0
358		2	82		1.0
361		17	82		1.0
376	4	80		16	1.0
379		22		77	1.0
391		6		80	0.999961
401	12			87	0.992554
405		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain