SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24424

Length: 744 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24424

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	plasma membrane protein 3 [Leymus chinensis]	-	-	5.0e-20	84%
FL-Next	tr=Low temprature induced-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	low temprature induced-like protein	-	-	6.83899e-30	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteolipid membrane potential modulator	IPR000612	-	0.0	-
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
207		50		25	0.995533
210		25	75		0.996473
212	75			25	0.996473
213		75	25		0.996473
215		25		75	0.996473
221		25		75	0.996473
224			75	25	0.996473
226	25	75			0.996473
227	75	25			0.996473
229	75	25			0.996473
230	25	75			0.996473
241		25		75	0.996473
274		25		75	0.996473
334	83	16			0.994512
343		83	16		0.994512
348		83	16		0.994512
396		80		20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
34	53	CTGAAT CTGAAT CTGAAT CT	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain