SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24412

Length: 464 nt

Origin of reads: Inia v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene24412
CGTCGTGACCTTGGCTGTCACTCATTCAATTGCTACCTTCAAATCTCCAAGTTGGTGTTTTCTCGGCTACCATGCCTCCTGAAGCTTTGGAGATTACTAGGAAGTTCATGAATAATCCAGTCAGGATTCTTGTCAAAAGAGACGAGCTTACCCTGGAGGGTATCAAACAGTTCTATGTCAATGTAGAACGTGAGGACTGGAAGCTTGATACACTGTGTGACTTATACGAAACTTTGGCAATCACACAGAGTGTGATTTTTATCAATACCAGAAGAAAGGTAGATATGCTCACAGATCAAATGCGAGCTCGGGATCATACAGTGTCTGCAACCCATGGTGACATGGATCAGAACACAAGAGACATCATCATGAGGGAATTTAGGTCTGGATCTTCTCGAGTGTTGATCACCACTGACCACTATAATAAGCACAGTCCCTCGCCAACAACAGAACAATTAGAGCCA

Ace file of the UniGene sp_v2.0_unigene24412 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	translational initiation factor eIF-4A [Zea mays] gb\|AAB67607.1\| translational initiation factor eIF-4A [Zea mays]	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	eukaryotic initiation factor 4a	-	-	96%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMF4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 60 aas, your sequence is shorter than subject: 154 - 286

Fln protein: S*PWLSLIQLLPSNLQVGVFSATMPPEALEITRKFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDHYNKHSPSPTTEQLEP

Protein Length: 155

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCAATTGCTACCTTCAAATCTCCAAGTTGGTGTTTTCTCGGCTACCATGCCTCCTGAAGCTTTGGAGATTACTAGGAAGTTCATGAATAATCCAGTCAGGATTCTTGTCAAAAGAGACGAGCTTACCCTGGAGGGTATCAAACAGTTCTATGTCAATGTAGAACGTGAGGACTGGAAGCTTGATACACTGTGTGACTTATACGAAACTTTGGCAATCACACAGAGTGTGATTTTTATCAATACCAGAAGAAAGGTAGATATGCTCACAGATCAAATGCGAGCTCGGGATCATACAGTGTCTGCAACCCATGGTGACATGGATCAGAACACAAGAGACATCATCATGAGGGAATTTAGGTCTGGATCTTCTCGAGTGTTGATCACCACTGACCACTATAATAAGCACAGTCCCTCGCCAACAACAGAACAATTAGAGCCA

Fln Alignment:

Contig24412___LIQLLPSNLQVGVFSATMPPEALEITRKFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD
B8LMF4_______________IFQLLPSNLQVGVFSATMPPEALEITRKFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain