SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24392

Length: 964 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene24392 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	probable xyloglucan endotransglucosylase hydrolase protein 23-like	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQJ9

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, W1: There is no M at the beginning,

Fln protein: SALGSQIQAPLFLLIHNYGHGHAPLSFLLITSSSLLVTVSANFYNDVDITWGNGRGKIFGNGQQLQLTLDHTSGSGFQSKNEYLFAKIDMQIKLVPGNSAGTVTAYYLSSQGPKHDEIDYEFLGNLSGDPYIMHTNIFAQGLGNREQQFYLWFDPTLAFHTYSVLWTPNQITFSVDGIPVRVFKNRETELGKVDSNYHYPKSQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVAAFNDFNAATSSSNFAGEEALDSNQEQKLQWVRNKYMIYDYCADTKR

Protein Length: 282

Fln nts: CGATTTCAGCCTCCTGGATGTTTAGTGATTTTACTCATTCGTTGCACACTCTTTCATTGCGCACGTCCATCTCCTGCTATTCTATTCCTTTCTTTTCCTTTCATCCCCTCCCTGCAATAATCTGCTCTTGGATCTCAAATTCAAGCTCCTCTATTTCTATTAATCCATAATTATGGACATGGGCATGCCCCTCTTTCTTTTCTATTAATAACCTCGTCGAGTCTTCTTGTAACTGTTTCTGCAAATTTCTACAACGACGTAGACATCACATGGGGCAATGGTCGCGGTAAAATCTTTGGGAATGGGCAACAATTGCAGCTTACTCTGGATCACACTTCAGGTTCTGGGTTTCAATCCAAGAATGAGTATCTGTTTGCTAAAATTGATATGCAAATCAAGTTGGTACCTGGCAATTCTGCAGGCACAGTTACGGCCTATTATCTGTCGTCTCAAGGTCCCAAACACGACGAAATAGACTATGAATTTCTAGGCAACCTTTCTGGAGATCCTTATATTATGCACACTAATATCTTCGCTCAAGGCCTTGGCAATCGTGAGCAGCAATTCTACTTGTGGTTTGACCCAACCCTGGCTTTTCACACTTACTCCGTGCTCTGGACACCGAATCAAATTACATTTTCTGTGGACGGGATTCCTGTTCGTGTGTTTAAGAACAGGGAGACAGAGTTGGGTAAAGTGGATAGCAATTATCACTATCCTAAGAGCCAAGCAATGAGGGTCTATTCAAGCCTCTGGAATGCGGATGATTGGGCAACCAGAGGTGGCCTCGTCAAGACGGACTGGACTAAAGCCCCTTTTGTTGCAGCTTTCAATGACTTCAATGCTGCTACTTCTTCTTCGAACTTTGCCGGAGAGGAGGCTTTGGACTCAAACCAAGAGCAGAAGCTCCAGTGGGTGCGAAATAAGTATATGATCTACGATTACTGTGCAGACACAAAGAGGT

Fln Alignment:

Contig24392___ANFYNDVDITWGNGRGKIFGNGQQLQLTLDHTSGSGFQSKNEYLFAKIDMQIKLVPGNSAGTVTAYYLSSQGPKHDEIDYEFLGNLSGDPYIMHTNIFAQGLGNREQQFYLWFDPTLAFHTYSVLWTPNQITFSVDGIPVRVFKNRETELGKVDSNYHYPKSQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVAAFNDFNAATSSSNFAGEEALDSNQEQKLQWVRNKYMIYDYCADTKR
A9NQJ9_______________ANFNNDVDITWGNERAKILDNGQQLQLTLDRTSGCGFQSKAEYLFAKIDMQIKLVPGNSAGTVTAYYLSSQGPKHDEIDFEFLGNLSGDPYIMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGTPVRVFKKREKELGEVDNNYHYPKSQAMRIYSSLWNADDWATRGGLVKTDWSKAPFVASFRNFNAAISSSNFA-EEALDSNQEQKLQWVRNNYMIYDYCADTKR

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
390		80		20	0.995493
391		80	20		0.995493
392	80			20	0.995493
534	33		66		0.997452
546		25	25	50	0.995533
550			75	25	0.996473
552	33		66		1.0
587		33		66	0.997452
603	33	66			1.0
651		66		33	0.997452
702		33		66	0.997452
706			33	66	0.997452
709			66	33	0.997452
822			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain