SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24353

Length: 1462 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene24353 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chalcone synthase n=57 Tax=Pinaceae RepID=CHSY_PINSY	-	-	97%
FL-Next	tr=Chalcone synthase; Pinus pinaster (Maritime pine).	-	-	98%
Blast2go	chalcone synthase	-	-	98%

Source	InterPros	Term	Type	Identity
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Chalcone/stilbene synthase, active site	IPR018088	-	-
Sma3	Chalcone/stilbene synthase, N-terminal	IPR001099	-	-
Sma3	Polyketide synthase, type III	IPR011141	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q7XJC5

Fln msg:

Fln protein: MAAGMIKDFEAFRKAQRADGPATILAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMRKSSRQNGCSTTGEGLDVGVLFGFGPGLTVETVVLRSVPV*

Protein Length: 396

Fln nts: ATGGGGCCTCAAGCTCGGCTCTGCTCCTCTTCGCCTAACTCATCCCCTTAGATTCTGTGCTGCTCTGCGTAGCTGCCGAGCAGTAAGTAGCAAAAGTCATAAAACATT_-_ATGGCTGCAGGAATGATTAAGGATTTTGAGGCATTCAGGAAGGCTCAGAGGGCAGATGGCCCCGCCACTATTCTTGCTATTGGCACTGCCACTCCTCCCAATGCTGTTGATCAGAGTAGTTATCCTGATTACTACTTCAAAATCACCAACAGCGAGCATATGACAGAGCTGAAGGAGAAATTCAGGAGAATGTGCGACAAGTCGGCAATAAAGAAGAGATACATGTACTTGACGGAGGAGATTCTCCAGGAGAATCCCAACGTCTGCGAGTACATGGCGCCATCGCTGGACGCAAGGCAGGACATGGTTGTGGTGGAGGTGCCCAGGCTTGGAAAAGAAGCGGCTGCCAAGGCAATCAAAGAATGGGGTCAGCCCAAGTCGAAAATCACTCATGTCATTTTCTGCACTACCAGTGGAGTCGACATGCCCGGAGCCGACTATCAGCTGACAAAGCTTCTTGGCCTCCGCCCCAGCGTTAAGAGAGTCATGATGTACCAACAGGGCTGCTTCGCTGGAGGCACCGTTCTCCGTGTTGCTAAAGATCTGGCTGAGAACAATCGGGGAGCTCGGGTTCTGGTCGTCTGCAGTGAAATCACGGCTGTTACATTCCGTGGCCCGTCCGACACTCACCTCGACAGTATGGTCGGCCAAGCTCTCTTCGGCGACGGTGCGGCCGCCCTCATCGTTGGAGCTGATCCCGTTCCTGAGGTGGAGAAGCCATGTTTCGAGCTGATGTGGACTGCACAGACAATTCTTCCCGACAGCGACGGAGCAATCGACGGGCACTTGAGAGAGGTCGGACTTACCTTCCACCTTCTCAAGGACGTTCCAGGCCTCATCTCCAAGAACATCGAAAAGAGTCTGGTTGAGGCATTCCAGCAGTTCGGAATCTCGGACTGGAACCAATTATTCTGGATCGCCCATCCCGGAGGACCAGCCATTCTGGATCAGGTGGAGGCGAAGTTGAATCTGGATCCCAAGAAACTGAGGGCGACGAGGCAAGTGCTGAGCGACTACGGAAACATGTCGAGCGCGTGCGTGCACTTCATTTTGGACGAGATGAGGAAGTCCTCTCGGCAGAATGGATGTTCGACCACCGGAGAGGGATTGGATGTGGGAGTTCTGTTTGGATTCGGACCCGGCCTCACTGTTGAAACAGTCGTCCTAAGGAGTGTCCCGGTTTAG___TAATTGAACAGCGATCGCCTAGCAAATAAATCGCGCTGTTCGCTACGCTAAATGTTTGTTAATGTGCAAGATTCGCCAGAACCAGACAGAAACACAAGTTATTGATTATCACCAATCTTAAATTATACGATCCCTGTTCCTTTATATTACTATGAAATGTCTTCTGTAA

Fln Alignment:

Contig24353___MAAGMIKDFEAFRKAQRADGPATILAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFELMWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMRKSSRQNGCSTTGEGLDVGVLFGFGPGLTVETVVLRSVPV
Q7XJC5_______________MAAGMMKDLEAFRKAQRADGPATILAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILQENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAALIVGADPVPEVEKPCFELLWTAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFQQFGISDWNQLFWIAHPGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMRKSSHQNGCSTTGEGLDVGVLFGFGPGLTVETVVLKSVPL

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
172	87		12		0.992554
174			12	87	0.992554
177	87	12			0.992554
429		88		11	0.923564
430	11	88			0.923564
431			88	11	0.923564
432		11	88		0.923564
433	11		88		0.923564
434	88	11			0.923564
436		11	88		0.923564
437	11		88		0.923564
438	11		88		0.923564
439		87		12	0.992554
443		87		12	0.992554
444		87		12	0.992554
447	87			12	0.992554
448	87	12			0.992554
449		12		87	0.992554
450	87	12			0.992554
593	9	3	87		1.0
607			6	93	0.999453
610	6			93	0.999453
614		6		93	0.999453
836		35	7	57	1.0
845	88		11		0.923564
854	12		87		0.992554
872			62	37	1.0
881	87	12			0.992554
887	12		87		0.992554
1187		25	75		0.996473
1232	33	66			1.0
1247	23		76		1.0
1253	76	23			1.0
1262	23		76		1.0
1280	76		23		1.0
1283	15		76		0.999983
1286	23		76		1.0
1289	23		76		1.0
1295			23	76	1.0
1313	23	76			1.0
1316		76		23	1.0
1331	30	70			1.0
1333	70		30		1.0
1340	30	70			1.0
1361			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain