SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24341

Length: 291 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene24341
TACATGGGGGTGACAATATTCTTGTGAAGAAATTGTATACCAGAGCAGCAGAGAGAAAAGGGAGAAAGGATGGCTCGAACTAAGCAGACTGCCCGTAAGTCCACTGGTGGGAAGGCACCAAGGAAACAGCTCGCAACTAAGGCTGCCAGGAAATCTGCGCCCGCGACTGGCGGAGTGAAAAAACCTCACAGATTCAGGCCAGGTACTGTTGCCCTCCGTGAGATTCGAAAATACCAGAAGAGCACCGAACTTCTCATAAGGAAGTTGCCCTTCCAGCGTCTCGTCAGGGAA

Ace file of the UniGene sp_v2.0_unigene24341

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H3 n=2 Tax=Pediculus humanus corporis RepID=E0V960_PEDHC	-	-	8.0e-35	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	histone h3	-	-	4.2039e-45	98%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of gene silencing	GO:0060968	Biological Process	4.2039e-45	98%
Blast2go	protein binding	GO:0005515	Molecular Function	4.2039e-45	98%
Blast2go	plastid	GO:0009536	Cellular Component	4.2039e-45	98%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	4.2039e-45	98%

Source	InterPros	Term	Type	Identity
Sma3	Histone H3	IPR000164	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAJ9

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 74 - 136

Fln protein: MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVRE

Protein Length: 75

Fln nts: TACATGGGGGTGACAATATTCTTGTGAAGAAATTGTATACCAGAGCAGCAGAGAGAAAAGGGAGAAAGG_-_ATGGCTCGAACTAAGCAGACTGCCCGTAAGTCCACTGGTGGGAAGGCACCAAGGAAACAGCTCGCAACTAAGGCTGCCAGGAAATCTGCGCCCGCGACTGGCGGAGTGAAAAAACCTCACAGATTCAGGCCAGGTACTGTTGCCCTCCGTGAGATTCGAAAATACCAGAAGAGCACCGAACTTCTCATAAGGAAGTTGCCCTTCCAGCGTCTCGTCAGGGAA

Fln Alignment:

Contig24341___MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVRE
D5AAJ9_______________MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain