SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24318

Length: 620 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24318

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 78A4 n=1 Tax=Pinus radiata RepID=C78A4_PINRA	-	-	65%
FL-Next	sp=Cytochrome P450 78A4; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	75%
Blast2go	cytochrome p450	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
43		20	80		0.995493
44	80		20		0.995493
45	80			20	0.995493
46		20	80		0.995493
50	20	80			0.995493
54	80			20	0.995493
60			80	20	0.995493
62	20			80	0.995493
195		87	12		0.992554
203		11		88	0.923564
211	11		88		0.923564
212		11	88		0.923564
214			85	14	0.993533
217	85	14			0.993533
218	85			14	0.993533
220	85			14	0.993533
225			85	14	0.993533
226		14	85		0.993533
308		90	10		0.999898
313		85		15	1.0
314	85		5	10	0.999793
315	90		10		0.999898
319		85		10	0.999793
322	85	15			1.0
324	85	10	5		0.999793
398			52	47	1.0
541		9		72	0.999994
571		87		12	0.992554
572			87	12	0.992554
578		85		14	0.993533
579	85			14	0.993533
582	71	14			0.984337
610	60		20		0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain