SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24316

Length: 1452 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene24316 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol dehydrogenase n=1 Tax=Pinus pinaster RepID=F4MKM2_PINPS	-	-	75%
FL-Next	sp=Alcohol dehydrogenase; Malus domestica (Apple) (Pyrus malus).	-	-	72%
Blast2go	alcohol dehydrogenase	-	-	88%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P48977

Fln msg:

Fln protein: MQSAETQKKPIEDTIDPSSKLLSSTAGQVITCKAAVAWGPGQPMKIEKVQVAPPQAMEVRIKVHYTALCRTDFVFWEAKGQTPLFPRIFGHEAAGVVESVGEGVTELKPGDKVLPVFTGECKECRHCKSEDSNMCDLLRVNSGRGVMISDGKSRFSIEYTVVHVGCVAKINPEAPLDKVCILSCGVATGMGATLNVGKPKKGSTVAIFGLGSVGLAAAEGARIAGASRIIGIDLSNDRYEPAKPFGVTEFLNPKDYDKPIQEVIAEITDGGVDCSIECTGNIKAMIQAFEACHDGWGVSVLVGVTHSEAVFATSPVNFLNERTLKGTFFGNYKPRSDLPGLVEMYLNKTLELDKFITYEVSFAEINKAFDYMIKGEGLRTVIKVTE*

Protein Length: 388

Fln nts: GGGGATGTCGACCCTACAAGGAAAGCACCAAGCTCTACTGCAGGCGAAGTTGTCGC_-_ATGCAAAGTGCTGAGACGCAGAAGAAACCAATTGAGGATACGATCGATCCTTCAAGTAAATTGCTAAGCTCTACTGCAGGCCAAGTTATCACATGCAAAGCTGCTGTTGCTTGGGGACCGGGGCAGCCTATGAAGATTGAAAAAGTGCAAGTGGCACCTCCACAGGCAATGGAAGTCAGGATTAAAGTGCATTATACTGCCTTGTGTCGTACAGACTTTGTTTTTTGGGAAGCAAAGGGTCAAACTCCTCTCTTCCCCCGCATCTTTGGACATGAAGCAGCCGGAGTTGTTGAGAGTGTTGGAGAAGGGGTAACTGAACTCAAGCCGGGTGACAAGGTGCTCCCTGTATTTACCGGAGAATGTAAAGAATGCAGGCACTGCAAGTCAGAAGATAGCAACATGTGTGATCTTCTAAGAGTTAACAGTGGGAGAGGGGTTATGATAAGTGATGGAAAGTCAAGGTTTTCCATCGAGTACACTGTTGTGCATGTCGGATGTGTTGCCAAAATCAATCCCGAGGCTCCTCTTGACAAAGTTTGTATTCTAAGCTGTGGTGTTGCAACAGGGATGGGTGCTACTTTGAATGTAGGAAAACCCAAGAAAGGTTCGACAGTAGCAATATTTGGCCTTGGGAGTGTTGGGCTTGCTGCTGCTGAAGGGGCAAGAATTGCAGGAGCTTCTCGCATAATTGGCATAGATTTAAGCAATGACAGATATGAACCAGCGAAACCATTTGGCGTAACAGAATTTTTAAACCCTAAAGACTACGACAAGCCCATTCAAGAGGTAATTGCAGAAATAACTGATGGAGGAGTTGACTGCAGTATCGAATGCACAGGAAACATTAAGGCGATGATTCAGGCCTTTGAAGCCTGCCATGATGGTTGGGGTGTATCCGTGTTAGTGGGTGTCACTCATTCAGAGGCAGTGTTTGCAACGAGTCCTGTGAATTTTCTGAACGAAAGGACGTTGAAAGGAACCTTCTTTGGAAACTATAAACCTCGTTCAGATTTGCCAGGCCTTGTAGAGATGTATTTGAATAAGACGCTTGAATTGGATAAATTTATTACATATGAGGTTTCTTTTGCGGAGATCAACAAGGCATTTGATTACATGATTAAAGGAGAGGGTTTGAGAACTGTGATTAAAGTGACTGAGTAA___ATGTTCAAGAGGATGCCATGAATTTTGACCTTAGAATAGTGAAAAGTCTGATACATTGGAAAGGAAGCCATAAATTTTGAGCTTAGAATTAGTGAAAAGTCTGATACATTGGAAAGTGTTAATGGTTATCTATTGGATAAAGTTTTGTTCTCATAGATTAGGACACTTTGTTTAAATATGGATTCATTTTAAATGTGGCTGGCTGTTATAAAATTTGTAAAATATGAATGCTGGA

Fln Alignment:

Contig24316___LSSTAGQVITCKAAVAWGPGQPMKIEKVQVAPPQAMEVRIKVHYTALCRTDFVFWEAKGQTPLFPRIFXXXXXXXXXXXXXXXXELKPGDKVLPVFTGECKECRHCKSEDSNMCDLLRVNSGRGVMISDGKSRFSI---------------EYTVVHVGCVAKINPEAPLDKVCILSCGVATGMGATLNVGKPKKGSTVAIFGLGSVXXXXXXXXXXXXXXXXXXIDLSNDRYEPAKPFGVTEFLNPKDYDKPIQEVIAEITDGGVDCSIECTGNIKAMIQAFEACHDGWGVSVLVGVTHSEAVFATSPVNFLNERTLKGTFFGNYKPRSDLPGLVEMYLNKTLELDKFITYEVSFAEINKAFDYMIKGEGLRTVIKVTE
P48977_______________MSNTAGQVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQNPLFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKDCAHCKSEESNMCDLLRINTDRGVMLSDGKSRFSIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSDRFEEAKKFGVTEFVNPKAHEKPVQEVIAELTNRGVDRSIECTGSTEAMISAFECVHDGWGVAVLVGVPHKDAVFKTHPVNFLNERTLKGTFFGNYKTRTDIPSVVEKYMNKELELEKFITHKVPFSEINKAFEYMLKGEGLRCIIRMEE

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
317	87		12		0.992554
344	50		50		1.0
473	8	91			0.999766
474		91	8		0.999766
476		91	8		0.999766
477	8			91	0.999766
478		8	91		0.999766
480	91		8		0.999766
481		8		91	0.999766
482		8	91		0.999766
484	8		91		0.999766
485			50	50	1.0
487	91			8	0.999766
492		36	18	45	1.0
495			18	81	0.999994
503	93			6	0.999453
504			6	93	0.999453
509		92	7		0.999532
514		85	3		1.0
515	3	89	7		0.998606
516	89		10		1.0
520	3	6		89	0.998304
522	6	3	89		0.998304
649	70	30			1.0
714	8		66	25	1.0
770			88	11	0.923564
775	83		16		0.994512
776	83			16	0.994512
777			16	83	0.994512
779		16		83	0.994512
780	16			83	0.994512
783		16		83	0.994512
785	16	83			0.994512
786			16	83	0.994512
790		16	83		0.994512
791	83		16		0.994512
794		83	16		0.994512
795		60		40	1.0
807			60	40	1.0
837	60			40	1.0
839	60	40			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain