SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24314

Length: 1332 nt

Origin of reads: Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene24314 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aldo/keto reductase AKR [Manihot esculenta]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	auxin-induced protein pcnt115 isoform 1	-	-	84%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	tRNA/rRNA methyltransferase, SpoU	IPR001537	-	-
Sma3	RNA methyltransferase TrmH family	IPR004441	-	-
Sma3	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V	IPR006913	-	-
Sma3	RNA 2-O ribose methyltransferase, substrate binding	IPR013123	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQB7

Fln msg:

Fln protein: MAGLPLVGRLSLGSQGLEVSAQGLGCMGMSALYGPPKPEQEMIPLIRHAVSRGVTFLDTSDVYGPFTNEILVGKAIKGIREKVQLATKFGASFVDGKLKIQGDPAYVRACCEASLKRLEVDCIDLYYQHLSDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAIHPITAVQIEWSLWTRDVEEEIIPTCRELVIGIVPYSPLGRGFFTSGAKSVENLSNDDFRKTIPRFTVENFEKNKATLQKIAEIASRKGCSASQLSLAWIHHQGNDVSPIPGTTKVKNLEENIGALSVKIIPDEMQEIETILSNYGFSGNRFADDHQDFTWMNSETPPFSSWKVSVC*

Protein Length: 350

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTACGAGGCTAAGGACCAACGAGAAGAAGCAGtACTATATTACCGGATCGATcGATTGAGTGCCGCaCAGAGAGCGGAgCA_-_ATGGCGGGATTACCATtAGTGGGCcGGTTAAGTTTGGGGTCACAAGGACTAGAAGTATCAGCACAGGGATTAGGCTGCATGGGCATGTCAGCGTTGTATGGCCCTCCAAAGCCCGAGCAAGAAATGATACCTCTTATCCGACATGCCGTCTCGAGAGGTGTTACTTTCCTGGACACTTCGGACGTTTATGGCCCTTTCACCAACGAAATCCTCGTTGGAAAGGCCATTAAAGGAATTAGAGAGAAAGTCCAACTAGCCACAAAGTTTGGAGCCAGTTTTGTCGATGGAAAGCTCAAGATTCAAGGAGACCCTGCATATGTTCGTGCCTGCTGCGAAGCAAGCTTGAAGCGACTTGAAGTGGATTGCATTGATCTTTATTACCAACATCTTAGTGACACTAAAGTCCCCATTGAAGTTACGATTGGAGAGCTGAAGAAATTAGTAGAAGAAGGGAAAATAAAATACATCGGACTTTCCGAGGCCTCTGCATCGACAATTAGAAGGGCTCATGCTATTCATCCTATAACAGCAGTTCAGATAGAGTGGTCTTTGTGGACTAGGGATGTagAAGAGGAAATTATTCCCACCTGCAGGGAACTTGtTATTGGAATTGTGCCATACAGCCCTCTCGGGCGGGGTTTCTTTACTTCTGGAGCAAAGTCAGTTGAAAATTTAAGCAATGATGACTTTAGAAAGACAATTCCAAGGTTTACAGTTGAGAATTTTGAAAAGAACAAGGCGACATTGCAAAAGATAGCTGAAATAGCTTCCAGGAAGGGATGCTCCGCCAGTCAACTTTCCCTGGCTTGGATTCATCATCAGGGAAATGACGTTTCACCAATTCCTGGAACCACTAAAGTGAAGAATCTAGAAGAAAATATTGGTGCTCTTTCTGTGAAGATCATACCTGATGAGATGCAGGAAATAGAAACTATATTATCCAATTATGGATTCTCAGGAAATCGATTTGCTGATGATCACCAGGATTTCACGTGGATGAACTCAGAAACACCTCCTTTCTCTTCATGGAAGGTTTCCGTCTGCTAG___TTTTTAACATTGTTTTCTGCGAACAAAGCGAAATCGTCGTTTCCTGTCTGTTTTCAATGGTATATGCTCGGATATATGGTTATAAATATTATGTTGCAAATATCTTAAGAAGTTGAGTGTATTGTAAGCGTCCTATCCCATTCATATAATAGCGGCGTTGTGTGTTAGTTAGAAGTAG

Fln Alignment:

Contig24314___MAGLPLVGRLSLGSQGLEVSAQGLGCMGMSA-LYGPPKPEQEMIPLIRHAV-SRGVTFLDTSDVYGPFTNEILVGKAIKGIREKVQLATKFGASFVDGKLKIQGDPAYVRACCEASLKRLEVDCIDLYYQHLSDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAIHPITAVQIEWSLWTRDVEEEIIPTCRELVIGIVPYSPLGRGFFTSGAKSVENLSNDDFRKTIPRFTVENFEKNKATLQKIAEIASRKGCSASQLSLAWIHHQGNDVSPIPGTTKVKNLEENIGALSVKIIPDEMQEIETILSNYGFSGNRFADDHQDFTWMNSETPPFSSWKVSV
A9NQB7_______________MAKIPSVGRLHLGSQGFQVSAQGLGCMGMSSGSYGTPPPEEEMIPLIRHAIISKGITFLDTSDVYGPFTNEVLVGKAIKGNREKVQLATKFGVSFADGKPDIRGDPGYVRAACEASLKRLDVDCIDLYYQHRIDTKVPIEVTTGEMKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTRDAEEEIIPTCRELGIGIVPYSPLGRGFLSSGAKLVENLKDNDFRKALPKFRAENLERNNVTFEKICEIASRKGCSPGQLALAWIHHQGNDVSPIPGTTKVKNLEENIGALSVKLTPKEMKEIENVVSTCGFFGDRYGEVFKNLTWMNSETPPLSSWKNAV

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
839	25	75			0.996473
842	75	25			0.996473
905	25		75		0.996473
929		25		75	0.996473
937		25	75		0.996473
939			75	25	0.996473
940		75		25	0.996473
978	25		75		0.996473
1015	75	25			0.996473
1018	25		75		0.996473
1049	25		75		0.996473
1051		75		25	0.996473
1054	75		25		0.996473
1058			75	25	0.996473
1077		75		25	0.996473
1103		16	83		0.994512
1104	50		50		1.0
1106	83		16		0.994512
1125		16		83	0.994512
1138		66	33		1.0
1141		83	16		0.994512
1144		33		66	1.0
1154	83	16			0.994512
1155		16		83	0.994512
1159	16		66	16	0.988813
1165		20		80	0.995493
1185	33		66		1.0
1209			25	75	0.996473
1217	25		75		0.996473
1236		25		75	0.996473
1248		25	75		0.996473
1262	25		75		0.996473
1282	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain