SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24310

Length: 670 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene24310 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Non-specific lipid-transfer protein n=4 Tax=Picea sitchensis RepID=A9NJW4_PICSI	-	-	80%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	nonspecific lipid-transfer protein 2 precursor	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3		IPR003612	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
356		95	4		0.994598
656	8	71	15	2	1.0
657	17	77	1	1	1.0
658	4	74	1	10	1.0
659	3	75	4	8	1.0
660	83	5		11	1.0
661	3			96	0.990463

SSRs (tot: 1)

Start position	End position	Sequence	Length
44	56	ATTT ATTT ATTT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain