SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24294

Length: 1637 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24294

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Non-specific lipid-transfer protein n=4 Tax=Picea sitchensis RepID=A9NJW4_PICSI	-	-	81%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	nonspecific lipid transfer protein	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3		IPR003612	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NJW4

Fln msg:

Fln protein: MAGNGLLKSVFLVGLVVAVMTAWGVVTTEGAISCNQVVSALTPCAGYLIGNAATPAAACCPAIKGLDAQVKATPDRQAVCNCLKNQANSFGVKLGKAANLPGLCKVTDLNVPISSNVDCSKIH*

Protein Length: 125

Fln nts: ATGGGGCAGAAAAACGTTGACGGCCAGTCCACCGTGTGGGCGGTGCGGAGGGTATGGTGAGACATTTGATGCCATGCCTTGGACTATATGGCCCCCTTCTACTGTTTAACGAAAACCCTTATAAATTGGTTCTGCGTCTTATTATGGGGAACATCAGGTTTGAGCTGAGGCATATAATCTCTGTGTGTGCGCGTGTGAGTGAGTGAGAGAGGTGCGAGAA_-_ATGGCTGGGAATGGGTTGCTAAAATCGGTGTTCTTGGTTGGGCTTGTGGTGGCAGTGATGACTGCGTGGGGTGTTGTCACAACTGAGGGTGCCATATCGTGCAACCAGGTAGTGAGTGCCCTCACTCCATGTGCAGGATACCTAATTGGAAATGCAGCCACTCCTGCTGCCGCCTGTTGTCCTGCCATTAAGGGGCTAGACGCTCAAGTTAAAGCTACCCCTGATAGGCAGGCTGTTTGTAACTGCCTGAAGAATCAAGCAAACTCATTTGGTGTCAAACTGGGGAAGGCTGCCAATCTTCCTGGGCTGTGCAAGGTCACTGACCTTAACGTCCCTATCAGTTCTAATGTCGACTGTTCTAAAATTCACTGA___CGAGGCCTGCTGATGATCGAATCTGGGCTGGTGGCTTAGTTAGATAATGTAGTACAAGTATGTTAATCAGTACATGAACTTAACTTGCTACATAAAATGTTGTACCCAGGGTTTTCCCGTTTGAGTGTTACGTATTACTCCTGGAAATGCCTTTAGGCGTTTTTTTAGTAATTTTAAATAAATAAATGGTGATGCCAGCCACGTTTAGCTTTTGTCTATCGTTACGTCGCCAATTTCTTGTTTGTTCAACAACCCTCAATTCGAGTACTTGCAGACAGGATCAAGATTTTCAATTTaGTGCAcCAtGTAGGATCTTTCTGGTGCATTTTTTTTTCCCCGAAAGTTATTGATTTTTATCTATACTGATTCTCGGTAATGGGAGTCATAAAAATCTGGTAGCTCAGGATCTAACATGGATTTCATTTATTCATTTTTCGTTCTTTCTGGAAACCAGAGAGGCAATAACGCATAAAGGATTGTACATACTCATACAGCCAAGCAAACACAAACAAATCTATTACTTCTCAAAGCCAGAGGAAACATTGTACCTGAATTAGAACATCAAGGGAAATCCAACTTATTACACTTCTCAAAGCCAGACGAAACATTGTACCTGAAATAGAACATAAAGGGAAATCCAACTTATTACGTCTCAAAGCCAGAGGAAATATTGTACCTGAAGTAGAACATCAAGGGAAATCCAACGCCAATTCCAATTGTTCCATCACAGCCCCTACTTCCATCGTAAGTTGTTTGGCCTGAAGTAAACTTCAAGGGAAATCCAACAACAATTCCAGTTATTTCATCCATCGTAAGCTGTCTGGCCATCAATATTTCAATATTATTGACACAAATTCACAGAATACTACGCCATCAAAGTATCTTCACCTTGATCTTCCTCCCTCCTTAAATTGAAATCAAATTTAATTCCAGTCCACACTTACAAGCAATATTTCAATATTATTGACACCGCAGATGTAGATCACTTCCAGGCTCCATGAATTCACAGAATGCTACGCCATCAAAGTCTCTTCAGCTGACCCAT

Fln Alignment:

Contig24294___MAGNGLLKSVFLVGLVVAVMTAWGVVTTEGAISCNQVVSALTPCAGYLIGNXXXXXXXXXXXIKGLDAQVKATPDRQAVCNCLKNQANSFGVKLGKAANLPGLCKVTDLNVPISSNVDCSKIH
A9NJW4_______________MAVNGMVKAVFLVGLVVAVMTAWGVVRTEGAISCNQVVSALTPCAGYLIGNAATPAAACCPAIKGLDSQIKATPDRQAVCNCLKNQATSFGVKLGKAANLPGLCKVTDINVPVNPNVDCSKIH

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
147			75	25	1.0
148			87	12	0.992554
151	37		12		1.0
152	87			12	0.992554
153		87	12		0.992554
154	87		12		0.992554
155			12	87	0.992554
156		87	12		0.992554
240		87		12	0.992554
285		12	87		0.992554
312			87	12	0.992554
448	5		94		0.998744
537	2		97		0.956062
546		97	2		0.949185
547	2			97	0.951554
548			2	97	0.953846
549	97		2		0.953846
550	97	2			0.953846
554		97	2		0.956062
556		97		2	0.956062
557			2	97	0.956062
560		97	2		0.956062
563		3		93	0.998241
566			2	97	0.960269
570		2	97		0.960269
612	2		97		0.979771
637	2			97	0.979771
664		91		8	1.0
698		50		50	1.0
739	51		48		1.0
762	21		78		1.0
797	3	17	79		1.0
809		21		78	1.0
810		84		15	0.999986
822		71	28		1.0
823		28	71		1.0
831		85		14	0.993533
845	71	28			1.0
857			71	28	1.0
872	33		66		1.0
878	60			40	1.0
891		33		66	0.997452
897		33	66		0.997452
932		66	33		0.997452
940	66			33	0.997452
1270		80	20		0.999996
1271	40	60			1.0
1310	88		11		0.923564
1342	50			50	1.0
1382	57		42		1.0
1409	42	57			1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
195	207	GTGA GTGA GTGA G	13
767	779	TAAA TAAA TAAA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain