SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24282

Length: 1154 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24282

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Stress responsive protein n=3 Tax=Zea mays RepID=B6STP1_MAIZE	-	-	2.00386e-43	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	stress responsive protein	-	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRP6

Fln msg: your sequence is longer than subject: 280 - 231

Fln protein: MAYYGEYDSCQERNQRIYESPPISGYGYQQQPSRPLSDPCLNVTEGGHGFNEYGGPAASNKYSAGGGYMMNQSGYQQQPPRPPRDPCPNATGGGYGVNEYGGPAVYNKYNAGGGCMMNGQRIIPQGQIVRMCSKANPDYALAIRDGSAVMLFYNPNDPTMQWVKDESWSNQVRDQVGHPAFALVNKATGQALRHAIAESQEVLVTQYEGPSNYDENILWSESEDMGYGYRTIRMANNIGLNLDAFHSDRRSGGIRDGTRAVLWKWNKQDNQLWKLSPCY*

Protein Length: 281

Fln nts: TACACGGGACCACCATCATCTCGTTTAGTAATTTGTGTTTATTTCAAGAGTATTTAGCGTTTGGCATACTGTGAATCAATCAATCC_-_ATGGCATACTATGGGGAGTACGATTCATGCCAAGAGAGGAACCAGAGGATTTACGAGTCCCCGCCTATTTCAGGCTATGGCTATCAGCAGCAGCCGTCACGTCCCCTTAGCGACCCATGCCTAAATGTAACAGAAGGAGGCCATGGATTTAACGAGTATGGAGGCCCCGCTGCCTCTAACAAGTATAGTGCAGGAGGAGGCTACATGATGAACCAGAGTGGCTATCAGCAGCAGCCACCACGTCCCCCTCGCGACCCATGTCCTAATGCAACAGGAGGAGGCTATGGAGTTAATGAATATGGAGGCCCTGCAGTTTATAACAAGTATAATGCAGGAGGTGGCTGCATGATGAACGGCCAGCGAATAATTCCACAAGGCCAGATCGTGAGGATGTGCTCTAAGGCAAATCCTGACTACGCTTTGGCTATCAGAGATGGCAGTGCCGTCATGCTCTTCTACAATCCCAATGATCCCACAATGCAATGGGTGAAGGATGAAAGCTGGAGTAACCAGGTGAGGGACCAAGTGGGTCATCCTGCATTTGCTCTGGTGAACAAAGCCACTGGTCAAGCTCTCCGCCATGCCATTGCTGAAAGTCAGGAGGTGCTGGTCACTCAGTACGAGGGCCCCTCCAATTATGATGAGAACATATTGTGGAGTGAGAGTGAGGACATGGGTTATGGATATCGAACAATAAGAATGGCCAACAACATTGGGCTCAACTTGGACGCATTCCACAGCGACAGGAGGAGCGGAGGCATCAGAGATGGCACTCGCGCTGTGCTGTGGAAATGGAACAAGCAGGACAACCAGCTCTGGAAGCTCTCTCCATGCTATTAA___TTGCTGCATGCATATAATATATCTAGCATTATACTATGTTACTGTTAACATGGCTGGCATGAGTAGGAGATGATGCAATGCATAGCATAGCGTAGCAGCTACCACATGGATACGAAAGGATAGGATGGCTGATTATTGTAGTAAGATCAGAAAATATAGACCCACATACGCCTGTGTGTTTATGTACCTTTTTATCCTCTCATAAATAAATAAAGCCATTTCAGACTG

Fln Alignment:

Contig24282___MAYYG--EYDSCQERNQRIYESPPISGYGYQQQPSRPLSDPCLNVTEGGHGFNEYGGPAASNKYSAGGGYMMNQSGYXXXXXXXXXXXXXNATXXXXXXXXXXXPAVYNKYNAGGGCMMNGQRIIPQGQIVRMCSKANPDYALAIRDGSAVMLFYNPNDPTMQWVKDESWSNQVRDQVGHPAFALVNKATGQALRHAIAESQEVLVTQYEGPSNYDENILWSESEDMGYGYRTIRMANNIGLNLDAFHSDRRSGGIRDGTRAVLWKWNKQDNQLWKLSPCY
A9NRP6_______________MAYYGDYEYDSYQESNERIYERPPSSGYGHQPQLARP---PCQNATQGGYGFNEYGGRAAC-----------------------------------------------NKFNAGGGCMRNSQQIIPQGQIVRVCSKANPDYALAIRDGRAVMVFYNPNDPTMQWVKDESWSNQVRDQVGHPAFALVNKATGQALRHAIAESQEVLLTQYKGPSTYDENILWSESEDMGYGYRTVRMANNIGLNLDAFQGDRRNGGIRDGTRAVLWKWNKQDNQLWKLSPCY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
649		87		12	0.992554
1001	11		88		0.923564
1004	88			11	0.923564
1010	87			12	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
1128	1140	ATAA ATAA ATAA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain