SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24213

Length: 1948 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene24213
CAAGCGCCCAAAAGCTAGAGATGGGCAAGTCGGGGCCGCCATTTTTGGTTACGGGTCGCTTATAAAAACAATCTCCCCAGCCCCCATCGTCCATTATCTCGTTTTACCCTTCAACCAACAATACCTATACCTCCGCCTCTTGTCAATTTCAGGCTCTTTCTTTCCTATTTTTCAGACAGGGTACAGTTGCGATATTCACACAAGGCCGCCATTATCATCTATCTTTCAAGAAGCAGTAGACCAAACAAGCAAAAGCGGAAAAACTATGGGAAAGAAGAAGAGGAAGGCTCCCAAGGTCTGGTGTTATTACTGTGAGCGCGAGTTCGATGATGAAAAGATATTGGTTCAGCATCAGAAGGCCAAACATTTCAAGTGCCATGTCTGCCACAAGAAGCTGTCTACCGCTGGAGGCATGGCCATCCATGTCCTTCAAGTCCACAAGGAAACTGTCACCAAGGTACCAAATGCAAAGCCTGATAGAGAGTCAACGGAGATTGATATTTTTGGTATGGAGGGAATTCCTCCTGACATATTGGCTGCTCATGACGAAGAACATGATGATGAAAAGCCCTCAAAGACAGCCAAGGTGGAAGTTCCTCCCTCTGGATTTGGAGGGATTGGGATGGGATCATCAGCAATTCATATGCCTCCCCAAACAGCATATTCTGCAGTGCCTCCTCTGTATCCTCCACCATCTGTTCCAATACGTCCTTCACCGTGGCATGTTCCATCACCTTCATCTCAGCCCTGGTCCTCAGCACAATCTATTATACCTGGGCAACCTCCATTGATGCCCATGAGGCCACCTCAATTACCTCAACCACAACAACCCTTGTTTCCTATTCAGAACATTCAGCCCTCTTCATCAAACTCTGTCACACCATCTTTGCAGAGTCCAATGGTCCCAAGACCACATCCACCACCCCCACCACTATTCCCTATTCAGAACAGACAACCTTCAACACCTATTTCAACTCCTTCATCCACTCAATCTTCAATGCAACCATTATATTCCCCTAGTGCTCCATTGACGCCATATACAGCACCATCTTCTCAAGCATTGTTTCCTATTAATGGTCCATATTCAAATACATCAGTTGCGTCAAATCTTCCAACACTATCTCAATATGGCTTGCCACAACGGCCAACAAGTGAATTGAGAAGTTCAGGGGAGACAAGCTCAGTGAGTTCATTGCCATCAAATTTGACAAACAAGCCGCTAAATGCTCCTGCGTTTCCAGGTGGTTCTGCTTCAACTGCAACCCCATCTCACATGTATGCATTAGGACCAAATACTGGGGGCCCATCCATTGGGCCTCCCCCAGTGATATCAAATAAACCACCTGCAGCTCAGGGGTTTACTAAGGAGGTGTATTTGGTTTGGGATGATGAAGCAATGTCCATGGAAGAACGAAGGACATCCCTTGCCAAATATCAGGTGCATGACGTGACCTCACAGATGAGCTCTGTTGATGCAGCTATTGATAGAAGGATATTAGAAAGCAGGCTTGCTGGTCGTATGGGGTTTGGAATCTGATCAAGGATTTCATTTTGAAGGTAGCATTAACCGAACACCTTTTTCAACCTATGGAGTTCGTACAACTATCGAAGATAGAACCTGCCAAATTAGTGTATCTTCTCTTGAAAAATTCAAATTGCTTCATAAGAATATTTTTGGTCAAGACTTCCTGCAGGAAGAATTTTGTACTGTATGATTTTTCCTAGAGCAGGAAACAGCTATGACTGGCCGTCGTTTTACACTGGCCGTCGTTTACAGTCAGGAAACAGCGACGCCAGGAAACAGCTATGACTGGCCGTCGTTTTACAGTCAGGAAACAGCTATGACTGGCCGTCGTTTTACAGTCAGGAAACAGCTATGACTGGCCGTCGTTACTACAACAGCTATGATCAGGAAACAGCTATGGTCAGGAAACAGCTATGACTGGCC

Ace file of the UniGene sp_v2.0_unigene24213 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1421 multi-domain protein	-	-	9.0e-18	23%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	74%
Blast2go	zinc finger protein	-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	84%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	84%
Blast2go	DNA binding	GO:0003677	Molecular Function	84%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	84%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3		IPR002917	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GTP-binding protein Era	IPR005662	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SQ89

Fln msg: your sequence is longer than subject: 424 - 290

Fln protein: MGKKKRKAPKVWCYYCEREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKETVTKVPNAKPDRESTEIDIFGMEGIPPDILAAHDEEHDDEKPSKTAKVEVPPSGFGGIGMGSSAIHMPPQTAYSAVPPLYPPPSVPIRPSPWHVPSPSSQPWSSAQSIIPGQPPLMPMRPPQLPQPQQPLFPIQNIQPSSSNSVTPSLQSPMVPRPHPPPPPLFPIQNRQPSTPISTPSSTQSSMQPLYSPSAPLTPYTAPSSQALFPINGPYSNTSVASNLPTLSQYGLPQRPTSELRSSGETSSVSSLPSNLTNKPLNAPAFPGGSASTATPSHMYALGPNTGGPSIGPPPVISNKPPAAQGFTKEVYLVWDDEAMSMEERRTSLAKYQVHDVTSQMSSVDAAIDRRILESRLAGRMGFGI*

Protein Length: 425

Fln nts: CAAGCGCCCAAAAGCTAGAGATGGGCAAGTCGGGGCCGCCATTTTTGGTTACGGGTCGCTTATAAAAACAATCTCCCCAGCCCCCATCGTCCATTATCTCGTTTTACCCTTCAACCAACAATACCTATACCTCCGCCTCTTGTCAATTTCAGGCTCTTTCTTTCCTATTTTTCAGACAGGGTACAGTTGCGATATTCACACAAGGCCGCCATTATCATCTATCTTTCAAGAAGCAGTAGACCAAACAAGCAAAAGCGGAAAAACT_-_ATGGGAAAGAAGAAGAGGAAGGCTCCCAAGGTCTGGTGTTATTACTGTGAGCGCGAGTTCGATGATGAAAAGATATTGGTTCAGCATCAGAAGGCCAAACATTTCAAGTGCCATGTCTGCCACAAGAAGCTGTCTACCGCTGGAGGCATGGCCATCCATGTCCTTCAAGTCCACAAGGAAACTGTCACCAAGGTACCAAATGCAAAGCCTGATAGAGAGTCAACGGAGATTGATATTTTTGGTATGGAGGGAATTCCTCCTGACATATTGGCTGCTCATGACGAAGAACATGATGATGAAAAGCCCTCAAAGACAGCCAAGGTGGAAGTTCCTCCCTCTGGATTTGGAGGGATTGGGATGGGATCATCAGCAATTCATATGCCTCCCCAAACAGCATATTCTGCAGTGCCTCCTCTGTATCCTCCACCATCTGTTCCAATACGTCCTTCACCGTGGCATGTTCCATCACCTTCATCTCAGCCCTGGTCCTCAGCACAATCTATTATACCTGGGCAACCTCCATTGATGCCCATGAGGCCACCTCAATTACCTCAACCACAACAACCCTTGTTTCCTATTCAGAACATTCAGCCCTCTTCATCAAACTCTGTCACACCATCTTTGCAGAGTCCAATGGTCCCAAGACCACATCCACCACCCCCACCACTATTCCCTATTCAGAACAGACAACCTTCAACACCTATTTCAACTCCTTCATCCACTCAATCTTCAATGCAACCATTATATTCCCCTAGTGCTCCATTGACGCCATATACAGCACCATCTTCTCAAGCATTGTTTCCTATTAATGGTCCATATTCAAATACATCAGTTGCGTCAAATCTTCCAACACTATCTCAATATGGCTTGCCACAACGGCCAACAAGTGAATTGAGAAGTTCAGGGGAGACAAGCTCAGTGAGTTCATTGCCATCAAATTTGACAAACAAGCCGCTAAATGCTCCTGCGTTTCCAGGTGGTTCTGCTTCAACTGCAACCCCATCTCACATGTATGCATTAGGACCAAATACTGGGGGCCCATCCATTGGGCCTCCCCCAGTGATATCAAATAAACCACCTGCAGCTCAGGGGTTTACTAAGGAGGTGTATTTGGTTTGGGATGATGAAGCAATGTCCATGGAAGAACGAAGGACATCCCTTGCCAAATATCAGGTGCATGACGTGACCTCACAGATGAGCTCTGTTGATGCAGCTATTGATAGAAGGATATTAGAAAGCAGGCTTGCTGGTCGTATGGGGTTTGGAATCTGA___TCAAGGATTTCATTTTGAAGGTAGCATTAACCGAACACCTTTTTCAACCTATGGAGTTCGTACAACTATCGAAGATAGAACCTGCCAAATTAGTGTATCTTCTCTTGAAAAATTCAAATTGCTTCATAAGAATATTTTTGGTCAAGACTTCCTGCAGGAAGAATTTTGTACTGTATGATTTTTCCTAGAGCAGGAAACAGCTATGACTGGCCGTCGTTTTACACTGGCCGTCGTTTACAGTCAGGAAACAGCGACGCCAGGAAACAGCTATGACTGGCCGTCGTTTTACAGTCAGGAAACAGCTATGACTGGCCGTCGTTTTACAGTCAGGAAACAGCTATGACTGGCCGTCGTTACTACAACAGCTATGATCAGGAAACAGCTATGGTCAGGAAACAGCTATGACTGGCC

Fln Alignment:

Contig24213___APKVWCYYCEREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKETVTKVPNAKPDRESTEIDIFGMEGIPPDILAAHDEEHDDEKPSKTAKVEVPPSGFGGIGMGSSAIHMPPQT
B9SQ89_______________ASKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESITKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGDEEEDNPSKVAKVDL-PSPLGGIMPGPVGVGYPPQT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain